View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-2 (Length: 230)
Name: Solexa-NF5814-2
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-2 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 26733118 - 26732900
Alignment:
| Q |
8 |
tcaagttatttccaccatcatccactagatattgcagaatcgtattctatgtttggttaaagtgtattatgcattagttaaatttttaattgtttttatg |
107 |
Q |
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| T |
26733118 |
tcaagttatttccaccatcatccactagatattgcagaatcgtattctatgtttggttaaagtgtattatgcattagttaaatttttaattgtttttatg |
26733019 |
T |
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| Q |
108 |
cgtatatggttctgtcccaaacattttcaagtttaaatataaataatctttttggattatactagagtgattagatgtaaatcaactttgtgacaatgga |
207 |
Q |
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| T |
26733018 |
cgtatatggttctgtcccaaacattttcaagtttaaatataaataatctttttggcttatactagagtgattagatgtaaatcaactttgtgacaatgga |
26732919 |
T |
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| Q |
208 |
ttatagctagagcattcat |
226 |
Q |
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||||||||||||||||||| |
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| T |
26732918 |
ttatagctagagcattcat |
26732900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 26724638 - 26724460
Alignment:
| Q |
8 |
tcaagttatttccaccatcatccactagatattgcagaatcgtattctatgtttggttaaagtgtattatgcattagttaaatttttaattgtttttatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26724638 |
tcaagttatttccaccatcatccactagatattgcagaatcgtattctatgtttggttaaagtgtattatgcattagttaaatttttaattgtttttatg |
26724539 |
T |
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| Q |
108 |
cgtatatggttctgtcccaaacattttcaagtttaaatataaataatctttttggattatactagagtgattagatgtaa |
187 |
Q |
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| T |
26724538 |
cgtatatggttctgtccctaacatttccaagttt-aatataaataatctttttggcttatactagagtgattagatgtaa |
26724460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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