View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-20 (Length: 143)
Name: Solexa-NF5814-20
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-20 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 29449516 - 29449647
Alignment:
| Q |
8 |
ctggaatggtgtgacatatatcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtg |
107 |
Q |
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| T |
29449516 |
ctggaatggtgtgacat----cacacttctctcttgtgtaaaaatctcacacgaggggatccattccccgtggaattgtgaatggggatgacctttggtg |
29449611 |
T |
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| Q |
108 |
aaagaaaaggccaacagaagtgtgacaaagatctca |
143 |
Q |
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| T |
29449612 |
aaagaaaaggccaatagaagtgtgacaaagatctca |
29449647 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 29462380 - 29462490
Alignment:
| Q |
32 |
acttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtg |
131 |
Q |
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| T |
29462380 |
acttctctctcgtgtaaaaatctcacatgaggggatccgtttccggtggaattatgaatggggatgacctatggtgaaag-aaaggcctacaaaagtgtg |
29462478 |
T |
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| Q |
132 |
acaaagatctca |
143 |
Q |
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| T |
29462479 |
acaaagatctca |
29462490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 9363554 - 9363451
Alignment:
| Q |
44 |
tgtaaaaatctcacacgaggggatccattccccatggaattg-----tgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaaga |
138 |
Q |
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| T |
9363554 |
tgtaaaaatctcacatgaggggatccattcccggtggaatcgaatcgtgaatggggatgacctatggtggaag-aaaggcctactgaagtgccacaaaga |
9363456 |
T |
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| Q |
139 |
tctca |
143 |
Q |
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| T |
9363455 |
tctca |
9363451 |
T |
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