View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-21 (Length: 143)
Name: Solexa-NF5814-21
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-21 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 40543907 - 40543779
Alignment:
| Q |
12 |
aacatatttaagttaaaaa--gagacacaacaacacaagtagaacatgaaaaacaaggaaacatcataagaaacatagttaaccaaatttgaaacattca |
109 |
Q |
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| T |
40543907 |
aacatatttaagttaaaaacagagacacaacaacacaagtagaacatgaaaaacaaggaaacatcataagaaacatagttaaccaaatttgaaacattca |
40543808 |
T |
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| Q |
110 |
cccttgagggctcaaatctgtcgacaatc |
138 |
Q |
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| T |
40543807 |
cccttgagggctcaaatctgtcgacaatc |
40543779 |
T |
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