View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-24 (Length: 141)
Name: Solexa-NF5814-24
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 5e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 41656717 - 41656580
Alignment:
| Q |
8 |
tcaagggggatcaaagtgacatttggaacttgaatggttatggagtatat----tctatgagagaagcacaaccatataaggtgttaacagggggaatca |
103 |
Q |
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| T |
41656717 |
tcaagggggatcaaagtgacatttggaacttgaatggttatggagtatatatattctgtgagagaagcacaaccatataaggtgttaacagggggaatca |
41656618 |
T |
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| Q |
104 |
cacaaccataaccctttttgaacaagtaatcatcaaac |
141 |
Q |
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| T |
41656617 |
cacaaccataaccctttttgaacaagtaatcatcaaac |
41656580 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 41661645 - 41661603
Alignment:
| Q |
79 |
tataaggtgttaacagggggaatcacacaaccataaccctttt |
121 |
Q |
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| T |
41661645 |
tataaggtgttaacagggggaaccacacaaccacaaccatttt |
41661603 |
T |
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