View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-27 (Length: 139)
Name: Solexa-NF5814-27
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-27 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 9e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 7415490 - 7415367
Alignment:
| Q |
9 |
tatctaaccaaatttcatgatactttgtgtttaccaaaagcaatccctcatacttgtttatataaatgaataaataccataagctctatattcaatgaca |
108 |
Q |
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| T |
7415490 |
tatctaaccaaatttcatgatactttgtgtttaccaaaaccaatccctcatacttgtttatataaatgaataaataccataagctctatattcaatgaca |
7415391 |
T |
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| Q |
109 |
ggcaagggaagttagtgggagaaa |
132 |
Q |
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| T |
7415390 |
ggcaagggaagttagtgggagaaa |
7415367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 7461573 - 7461450
Alignment:
| Q |
9 |
tatctaaccaaatttcatgatactttgtgtttaccaaaagcaatccctcatacttgtttatataaatgaataaataccataagctctatattcaatgaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461573 |
tatctaaccaaatttcatgatactttgtgtttaccaaaaccaatccctcatacttgtttatataaatgaataaataccataagctctatattcaatgaca |
7461474 |
T |
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| Q |
109 |
ggcaagggaagttagtgggagaaa |
132 |
Q |
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| T |
7461473 |
ggcaagggaagttagtgggagaaa |
7461450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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