View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-28 (Length: 138)
Name: Solexa-NF5814-28
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31733093 - 31733230
Alignment:
| Q |
1 |
gaaaagtggctaaagtttcataaagttcttaaaactaatgtggttggtatcttagtacctattagatagcaagttaagaatttaaagatatatctacaat |
100 |
Q |
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| T |
31733093 |
gaaaagtggctaaagtttcataaaattcttaaaagtaatgtggttggtatcttagtacccatcagatagcaagttaagaatttaaagatatatctacaat |
31733192 |
T |
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| Q |
101 |
atatatgtgcatttggacacatctagcttttcgtaatt |
138 |
Q |
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| T |
31733193 |
gtatatgtgcatttggacacatctaacttttcgtaatt |
31733230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32853030 - 32852902
Alignment:
| Q |
1 |
gaaaagtggctaaagtttcataaagttcttaaaactaatgtggttggtatcttagtacctattagatagcaagttaagaatttaaa-----gatatatct |
95 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
32853030 |
gaaaagtggctaaagtttcataaagttcttaaaactgatgtggttggtatcttagtacccatcagatagcaagttaagaacttaaaagatggatatatct |
32852931 |
T |
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| Q |
96 |
acaatatatatgtgcatttggacacatct |
124 |
Q |
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| T |
32852930 |
acaatgtatatgtgtatttggacacatct |
32852902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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