View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-29 (Length: 137)
Name: Solexa-NF5814-29
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-29 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 3e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26732602 - 26732758
Alignment:
| Q |
1 |
cagagagcacattcaagatagtgatgcaataggtgttaccctaaattcaggtagt--------------------aaatttgaacatgcattttacatag |
80 |
Q |
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| T |
26732602 |
cagagagcacattcaagatagtgatgcaataggtgttaccctaaattcaggtagtgaattttgtatagttgaacgaaatttgaacatgcattttacatag |
26732701 |
T |
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| Q |
81 |
atgccaacagtcaaataagtaaagatgattgttattctagtcttacacctttttgta |
137 |
Q |
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| T |
26732702 |
atgccaacagtcaaataagtagagatgattgttattctagtctaacacctttttgta |
26732758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 26724237 - 26724318
Alignment:
| Q |
56 |
aaatttgaacatgcattttacatagatgccaacagtcaaataagtaaagatgattgttattctagtcttacacctttttgta |
137 |
Q |
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| T |
26724237 |
aaatttgaacatgcattttacatagatgccaacagtcaaataagtagagatgattgttattctagtctaacacctttttgta |
26724318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 26724173 - 26724216
Alignment:
| Q |
12 |
ttcaagatagtgatgcaataggtgttaccctaaattcaggtagt |
55 |
Q |
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| T |
26724173 |
ttcatgatagtgatgcaataagtgttaccctaaattcaggtagt |
26724216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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