View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-30 (Length: 135)
Name: Solexa-NF5814-30
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 10707336 - 10707209
Alignment:
| Q |
8 |
aattaagcatgaaatgtggtgttaaatgctgatgcttcacgaatttataacacgtcacaaattgatggcagctccgatcgcaactagatgatgctatagc |
107 |
Q |
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| T |
10707336 |
aattaagcatgaaatgtggtgttaaatgctgatgcttcacgaatttataacacgtcacaaattgatggcagctccgatcgcaactagatgatgctatagc |
10707237 |
T |
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| Q |
108 |
tagtgaatgcccattttggggtgacttg |
135 |
Q |
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| T |
10707236 |
tagtgaatgcccattttgcggtgacttg |
10707209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 26651603 - 26651730
Alignment:
| Q |
8 |
aattaagcatgaaatgtggtgttaaatgctgatgcttcacgaatttataacacgtcacaaattgatggcagctccgatcgcaactagatgatgctatagc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651603 |
aattaagcatgaaatgtggtgttaaatgctgatgcttcatgaatttataacacgtcacaaattgatggcagctccgatcgcaactagatgatgctatagc |
26651702 |
T |
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| Q |
108 |
tagtgaatgcccattttggggtgacttg |
135 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
26651703 |
tagtgaatgcccattttgcggtgacttg |
26651730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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