View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-31 (Length: 135)
Name: Solexa-NF5814-31
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 34677065 - 34676932
Alignment:
| Q |
2 |
acgtaggatttaaacataatcagacattttgaatgttctgtaagctataatcagatgaaattttcattactgtcaacttataatataatggtggttgaaa |
101 |
Q |
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| T |
34677065 |
acgtaggatttaaacataatcagacattttgaatgttctgtaagctataatcaaatgaaattttcattactgtcaacttataatataatggtggttgaaa |
34676966 |
T |
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| Q |
102 |
tgttacttagatggaatagcttacctaattttgt |
135 |
Q |
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| T |
34676965 |
tgttacttagatggaatagcttacctaattttgt |
34676932 |
T |
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Target: chr5 (Bit Score: 73; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 27710827 - 27710751
Alignment:
| Q |
57 |
tgaaattttcattactgtcaacttataatataatggtggttgaaatgttacttagatggaatagcttacctaatttt |
133 |
Q |
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| T |
27710827 |
tgaaattttcattaccgtcaacttataatataatggtggttgaaatgttacttagatggaatagcttacctaatttt |
27710751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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