View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-35 (Length: 128)
Name: Solexa-NF5814-35
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 2650709 - 2650589
Alignment:
| Q |
8 |
gtggggtggagtgggtcgtaggtttttccggtatatcggtacccattgtaattttctgtctgccacgagtgtttttgtgtcttgcatttactcgacaaga |
107 |
Q |
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| T |
2650709 |
gtggggtggagtgggtcgtaggtttttccggtatatcagtacctattgtaattttctgtctgccacgagggtttttgtgtcttgcatttactcgacaaga |
2650610 |
T |
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| Q |
108 |
ataaatttgctgtttctaaaa |
128 |
Q |
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| T |
2650609 |
ataaattttctgtttctaaaa |
2650589 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 24018970 - 24019008
Alignment:
| Q |
73 |
cgagtgtttttgtgtcttgcatttactcgacaagaataa |
111 |
Q |
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| T |
24018970 |
cgagtgtttatgcgtcttgcatttactcgacaagaataa |
24019008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 31034368 - 31034326
Alignment:
| Q |
73 |
cgagtgtttttgtgtcttgcatttactcgacaagaataaattt |
115 |
Q |
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| T |
31034368 |
cgagtgtttatgcgtcttgcatttactcgacgagaataaattt |
31034326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 46282708 - 46282741
Alignment:
| Q |
83 |
tgtgtcttgcatttactcgacaagaataaatttg |
116 |
Q |
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| T |
46282708 |
tgtgtcttgcatttactcgacgagaataaatttg |
46282741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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