View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-36 (Length: 128)
Name: Solexa-NF5814-36
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-36 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 5e-66; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 5e-66
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 2650287 - 2650413
Alignment:
| Q |
2 |
tattagccaaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccattgcaatactagaaactagcatttctagaag |
101 |
Q |
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| T |
2650287 |
tattagccaaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccattgcaatactagaaactagcatttctagaag |
2650386 |
T |
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| Q |
102 |
gttaactaatattgaaagaaaacctgt |
128 |
Q |
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| T |
2650387 |
gttaactaatattgaaagaaaacctgt |
2650413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 2503875 - 2503757
Alignment:
| Q |
9 |
caaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaacca--ttgcaatactagaaactagcatttctagaaggttaa |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |
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| T |
2503875 |
caaaaagtagcacaatatgaaacaagtttaaattaaccaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaagaaggttaa |
2503776 |
T |
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| Q |
107 |
ctaatattgaaagaaaacc |
125 |
Q |
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| T |
2503775 |
ttaacattgaaagaaaacc |
2503757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 2494495 - 2494377
Alignment:
| Q |
8 |
ccaaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccatt--gcaatactagaaactagcatttctagaaggtta |
105 |
Q |
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| T |
2494495 |
ccaaaaactagcatcatatgaaacaaagtcaagttaaccaacaaatgcaagag--tcaaatcatctagcaatactagaaactaccattgatagaaggtta |
2494398 |
T |
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| Q |
106 |
actaatattgaaagaaaacct |
126 |
Q |
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| T |
2494397 |
attaatattgaaagaaaacct |
2494377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 7340030 - 7340131
Alignment:
| Q |
25 |
atgaaacaagtttaaattaaccaacatatgcaagagagtcaaacca--ttgcaatactagaaactagcatttct-agaaggttaactaatattgaaagaa |
121 |
Q |
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|||||||||||| || |||||||||| | |||||||||||||| || | |||||||| ||||||||||| || | ||||||| |||||||||||||| |
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| T |
7340030 |
atgaaacaagttcaagttaaccaacagaggcaagagagtcaaatcatctagcaatact--aaactagcattgctaaaaaggttacttaatattgaaagaa |
7340127 |
T |
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| Q |
122 |
aacc |
125 |
Q |
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|||| |
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| T |
7340128 |
aacc |
7340131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 2632331 - 2632248
Alignment:
| Q |
20 |
atgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccat--tgcaatactagaaactagcatttctagaag |
101 |
Q |
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| T |
2632331 |
atgatatgattcaagttcaaaccaaccaatagatgcaagaaagtcaaatcatcttgcaattctagaaactagcatttctagaag |
2632248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 2484231 - 2484123
Alignment:
| Q |
19 |
catgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccatt--gcaatactagaaactagcatttctagaa-ggttaactaatattg |
115 |
Q |
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| T |
2484231 |
catgaaatgaaacaagttccagtaaaccaacagaggcaagacagtcaaatcatctagcaatacta--aactagcattgctagaaaggttacttaatattg |
2484134 |
T |
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| Q |
116 |
aaagaaaacct |
126 |
Q |
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| T |
2484133 |
aaagaaaacct |
2484123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 7438805 - 7438848
Alignment:
| Q |
83 |
aaactagcatttctagaaggttaactaatattgaaagaaaacct |
126 |
Q |
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| T |
7438805 |
aaactagcattgctagaaggttacttaatattgaaagaagacct |
7438848 |
T |
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