View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-37 (Length: 127)

Name: Solexa-NF5814-37
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-37
Solexa-NF5814-37
[»] chr8 (8 HSPs)
chr8 (29-91)||(17108301-17108363)
chr8 (29-110)||(29918532-29918611)
chr8 (29-91)||(5793510-5793572)
chr8 (29-110)||(17084191-17084272)
chr8 (29-93)||(6388604-6388668)
chr8 (29-91)||(36274968-36275029)
chr8 (29-93)||(30903971-30904035)
chr8 (64-110)||(14155492-14155536)
[»] chr2 (9 HSPs)
chr2 (29-93)||(13531875-13531939)
chr2 (29-93)||(25210303-25210367)
chr2 (29-93)||(34544410-34544474)
chr2 (29-100)||(17845485-17845555)
chr2 (29-91)||(29656836-29656898)
chr2 (29-106)||(30696850-30696925)
chr2 (30-93)||(13954672-13954735)
chr2 (30-93)||(14095879-14095942)
chr2 (43-91)||(42995773-42995821)
[»] chr7 (3 HSPs)
chr7 (30-93)||(11472811-11472874)
chr7 (29-92)||(4101472-4101535)
chr7 (29-72)||(5022516-5022559)
[»] chr4 (16 HSPs)
chr4 (29-91)||(33516174-33516236)
chr4 (29-90)||(37384204-37384265)
chr4 (29-93)||(8843904-8843968)
chr4 (29-93)||(8856868-8856932)
chr4 (29-93)||(9929267-9929331)
chr4 (29-93)||(33616215-33616279)
chr4 (29-93)||(39086087-39086150)
chr4 (42-93)||(9280989-9281040)
chr4 (42-90)||(4741318-4741366)
chr4 (33-93)||(21714075-21714135)
chr4 (29-93)||(36919054-36919118)
chr4 (35-93)||(21956914-21956971)
chr4 (31-93)||(42907820-42907881)
chr4 (29-93)||(12075731-12075795)
chr4 (60-92)||(43553408-43553440)
chr4 (37-93)||(50376451-50376507)
[»] chr1 (13 HSPs)
chr1 (29-91)||(16903441-16903503)
chr1 (29-93)||(42729043-42729107)
chr1 (29-93)||(13692570-13692635)
chr1 (29-93)||(36421692-36421756)
chr1 (29-93)||(39219184-39219248)
chr1 (32-91)||(43513130-43513189)
chr1 (33-91)||(5703275-5703332)
chr1 (32-85)||(47644966-47645019)
chr1 (33-94)||(48576216-48576277)
chr1 (28-91)||(8880373-8880436)
chr1 (64-110)||(13798199-13798243)
chr1 (29-87)||(25181129-25181188)
chr1 (34-93)||(48125782-48125841)
[»] chr5 (9 HSPs)
chr5 (29-93)||(24207612-24207676)
chr5 (29-93)||(12457442-12457506)
chr5 (32-92)||(16311394-16311453)
chr5 (29-91)||(27900503-27900565)
chr5 (37-91)||(35584050-35584103)
chr5 (37-91)||(38972855-38972909)
chr5 (29-93)||(17153094-17153158)
chr5 (65-93)||(18451985-18452013)
chr5 (29-92)||(6810083-6810146)
[»] chr3 (5 HSPs)
chr3 (31-93)||(37032197-37032259)
chr3 (29-90)||(27937664-27937725)
chr3 (29-93)||(772893-772956)
chr3 (31-90)||(30904917-30904976)
chr3 (64-110)||(42243347-42243391)
[»] chr6 (2 HSPs)
chr6 (29-93)||(9402514-9402578)
chr6 (33-85)||(10925550-10925602)
[»] scaffold1322 (1 HSPs)
scaffold1322 (30-93)||(1037-1100)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 17108301 - 17108363
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 29918532 - 29918611
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 110  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||||||||  ||||||||||||| ||||    
T  29918532 tgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattt--tttacatttgggacgggt 29918611  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 5793510 - 5793572
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| ||||||||||    
T  5793510 tgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 5793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 17084272 - 17084191
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 110  Q
    |||||| | ||| |||||||| ||  |||||||| ||||||||| ||| |||||||||||||| |||||||| | |||||||    
T  17084272 tgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggt 17084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 6388668 - 6388604
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| |||||||||||  |||| | | ||||||||| || |||||||||||||||||    
T  6388668 tgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 36274968 - 36275029
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||| ||||||||||||    
T  36274968 tgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 30903971 - 30904035
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||| |||||  |||| ||| ||||||||| |  |||||||||||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttct 30904035  T

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Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 14155492 - 14155536
Alignment:
Q  64 tatataaaagggataataaattgattttctttacatttgggatgggt 110  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||||    
T  14155492 tatataaaaggggtaataaattgattttc--tacatttaggatgggt 14155536  T

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Target: chr2 (Bit Score: 45; Significance: 4e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 13531875 - 13531939
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  13531875 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 25210303 - 25210367
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| || ||| |||||||||||||    
T  25210303 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttct 25210367  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 34544474 - 34544410
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||| || |||||||| ||||||||    
T  34544474 tgtgaatgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttct 34544410  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 17845555 - 17845485
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatt 100  Q
    |||||||||||| ||||||| ||  ||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  17845555 tgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttt-tttacatt 17845485  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 29656898 - 29656836
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    ||||||| |||| ||||||||||   |||| ||| ||||||||||||||||||||||||||||    
T  29656898 tgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 30696850 - 30696925
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggat 106  Q
    ||||||||| || ||||||||||| | ||| ||| ||||||||| || ||||||||||||||  ||||||||||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattt--tttacatttgggat 30696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 13954672 - 13954735
Alignment:
Q  30 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 13954735  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 14095879 - 14095942
Alignment:
Q  30 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 14095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 42995773 - 42995821
Alignment:
Q  43 tttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||    
T  42995773 tttacggtttaagtttttatttatataaaagagataataaattaatttt 42995821  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 11472874 - 11472811
Alignment:
Q  30 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 4101472 - 4101535
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 92  Q
    |||||||||||| ||| ||||||| ||||| ||| || ||||||  | ||||||||||||||||    
T  4101472 tgtgagtgaaatgattaagggtttgagtttttatttaaataaaattggtaataaattgattttc 4101535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 5022516 - 5022559
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaa 72  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||    
T  5022516 tgtgagtgaaattgtttagggtttgagtttcaatctatataaaa 5022559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 33516236 - 33516174
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| |||||||||    
T  33516236 tgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 37384204 - 37384265
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 90  Q
    |||||||||||| ||||||||||| |  || ||| |||||||||||||||||||||||||||    
T  37384204 tgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 8843968 - 8843904
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8843968 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 8856932 - 8856868
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8856932 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 9929331 - 9929267
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||||||||||| |||| ||||||||| |||||  ||| | |||||||||||||||||    
T  9929331 tgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 33616279 - 33616215
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| |||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  33616279 tgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 39086087 - 39086150
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  39086087 tgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg-tagtaaattgattttct 39086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 9281040 - 9280989
Alignment:
Q  42 atttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  9281040 atttagggtttgaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 4741366 - 4741318
Alignment:
Q  42 atttagggtttaagtttatatctatataaaagggataataaattgattt 90  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  4741366 atttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 21714135 - 21714075
Alignment:
Q  33 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 21714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 36919054 - 36919118
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| |||||| |||| ||||| ||| |||||||||| | ||||||| |||||||||    
T  36919054 tgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 21956971 - 21956914
Alignment:
Q  35 tgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||| |||||||||||  |||| ||| |||||||||||| |||||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 42907820 - 42907881
Alignment:
Q  31 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||| | || ||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttct 42907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 12075795 - 12075731
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||| ||||||| ||| || |||| ||||| ||| ||||||||| || |||||||||||||||||    
T  12075795 tgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttct 12075731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 43553408 - 43553440
Alignment:
Q  60 tatctatataaaagggataataaattgattttc 92  Q
    |||||||||||||||| ||||||||||||||||    
T  43553408 tatctatataaaaggggtaataaattgattttc 43553440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 50376507 - 50376451
Alignment:
Q  37 aaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||| |||||| |||| ||||| ||| ||||||||| ||| ||||||||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttct 50376451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 16903441 - 16903503
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||||||||||||    
T  16903441 tgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttt 16903503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 42729107 - 42729043
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| |||||| || ||||||| ||| |||||||||||||| ||||||| |||||||    
T  42729107 tgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 13692570 - 13692635
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataat-aaattgattttct 93  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||||||||| |||||||||||||    
T  13692570 tgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 36421692 - 36421756
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||| |||||| |||||| |||  ||||| ||| ||||||| ||||||||||||||||||||||    
T  36421692 tgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttct 36421756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 39219184 - 39219248
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||| ||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  39219184 tgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 39219248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 43513189 - 43513130
Alignment:
Q  32 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |  | |||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgatttt 43513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 5703332 - 5703275
Alignment:
Q  33 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttatat-tatataaaagatataataaattgatttt 5703275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 47645019 - 47644966
Alignment:
Q  32 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 85  Q
    ||||||||| ||||||| | | ||||| ||| ||||||||||||||||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 48576277 - 48576216
Alignment:
Q  33 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctt 94  Q
    |||||||| ||||||||||| || || ||| |||| |||| |||| ||||||||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttctt 48576216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 8880373 - 8880436
Alignment:
Q  28 ttgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    ||||||||||||| |||||  |||| ||||| ||| |||| ||||||| ||||||||| |||||    
T  8880373 ttgtgagtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatttatttt 8880436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 13798199 - 13798243
Alignment:
Q  64 tatataaaagggataataaattgattttctttacatttgggatgggt 110  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||||    
T  13798199 tatataaaaggggtaataaattgattttc--tacatttaggatgggt 13798243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 25181129 - 25181188
Alignment:
Q  29 tgtgagtgaaattattt-agggtttaagtttatatctatataaaagggataataaattga 87  Q
    ||||||||||||||||| || ||||| |||| ||| |||||| |||||||| ||||||||    
T  25181129 tgtgagtgaaattatttaagagtttaggtttctatttatatagaagggatagtaaattga 25181188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 48125841 - 48125782
Alignment:
Q  34 gtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||| |||||| |||| ||||| ||| |||||||||| | || ||||||||||||||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttct 48125782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 24207612 - 24207676
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttct 24207676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 12457442 - 12457506
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||||||  |||| |||| ||| ||||| |||||| |||||||||||||||||    
T  12457442 tgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttct 12457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 16311453 - 16311394
Alignment:
Q  32 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 92  Q
    |||| |||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttc 16311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 27900565 - 27900503
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    ||||| |||||| ||||||||||| ||||| ||| |||||||||| |  ||||||||||||||    
T  27900565 tgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgatttt 27900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  37 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaaggg-taataaattgatttt 35584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  37 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 91  Q
    |||| ||||||||||| |||||  || |||||||||||| |||||||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 17153094 - 17153158
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||||||||||| |||   ||| ||| ||| || ||||| |||||||||||||||||    
T  17153094 tgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttct 17153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 18452013 - 18451985
Alignment:
Q  65 atataaaagggataataaattgattttct 93  Q
    |||||||||||||||||||||||||||||    
T  18452013 atataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 6810083 - 6810146
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 92  Q
    |||||||||||| ||||| |||||  |||| |||  |||||||||||  |||||||||||||||    
T  6810083 tgtgagtgaaatcatttaaggtttgggtttctattgatataaaaggggcaataaattgattttc 6810146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 37032259 - 37032197
Alignment:
Q  31 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||| ||||||||||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  37032259 tgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 27937664 - 27937725
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 90  Q
    |||||||||||| |||||||||||| |||| ||| ||||||||||   ||||||||| ||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 772956 - 772893
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| ||| | ||||| ||||| ||| |||| ||||||| |||||||||||||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 30904976 - 30904917
Alignment:
Q  31 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 90  Q
    |||||||||| ||| |||||||  |||| ||| |||||||||||| || |||||||||||    
T  30904976 tgagtgaaatgattaagggtttgggtttctatttatataaaaggggtagtaaattgattt 30904917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 42243347 - 42243391
Alignment:
Q  64 tatataaaagggataataaattgattttctttacatttgggatgggt 110  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||||    
T  42243347 tatataaaaggggtaataaattgattttc--tacatttaggatgggt 42243391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 9402514 - 9402578
Alignment:
Q  29 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    |||||||||||| |||||||||||  |||| ||| |||||||| ||| || ||||||||||||||    
T  9402514 tgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttct 9402578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 10925602 - 10925550
Alignment:
Q  33 agtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 85  Q
    |||||||| ||||||||||| || || ||| ||||||||||| ||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 1037 - 1100
Alignment:
Q  30 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 93  Q
    ||||||||||| ||||| | ||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  1037 gtgagtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttct 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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