View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-38 (Length: 127)

Name: Solexa-NF5814-38
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-38
Solexa-NF5814-38
[»] chr6 (2 HSPs)
chr6 (7-127)||(33051066-33051186)
chr6 (23-119)||(33032840-33032936)
[»] chr4 (2 HSPs)
chr4 (28-122)||(8264038-8264132)
chr4 (28-122)||(8277456-8277550)
[»] chr1 (1 HSPs)
chr1 (49-119)||(9901029-9901098)
[»] chr7 (1 HSPs)
chr7 (34-119)||(7975171-7975255)
[»] chr5 (1 HSPs)
chr5 (34-119)||(13838155-13838239)
[»] chr2 (2 HSPs)
chr2 (34-119)||(26543712-26543796)
chr2 (34-113)||(43313120-43313198)
[»] chr3 (1 HSPs)
chr3 (34-113)||(1293814-1293892)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 5e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 33051066 - 33051186
Alignment:
Q  7 acatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33051066 acatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattttctcatacccaat 33051165  T
Q  107 atttttctgagcccttcatta 127  Q
    |||||||||||||||||||||    
T  33051166 atttttctgagcccttcatta 33051186  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 33032840 - 33032936
Alignment:
Q  23 tgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 119  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  33032840 tgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctcatacccattatttttctgagcc 33032936  T

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Target: chr4 (Bit Score: 71; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 8264038 - 8264132
Alignment:
Q  28 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 122  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8264132  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 8277456 - 8277550
Alignment:
Q  28 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 122  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8277550  T

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Target: chr1 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 9901098 - 9901029
Alignment:
Q  49 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 119  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||| ||||||||||||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatttttctgagcc 9901029  T

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Target: chr7 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 7975171 - 7975255
Alignment:
Q  34 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 119  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 7975255  T

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Target: chr5 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 13838239 - 13838155
Alignment:
Q  34 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 119  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 13838155  T

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Target: chr2 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 26543796 - 26543712
Alignment:
Q  34 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 119  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 26543712  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 43313198 - 43313120
Alignment:
Q  34 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttc 113  Q
    |||| |||||| |||||||||||||||||||||||| | || || |  ||||||||| ||||| ||||||| ||||||||    
T  43313198 ggctatgatgaatcatagagatagtcatgcaccactttaat-ttcctgtgctgataactttcttatacccattatttttc 43313120  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 1293892 - 1293814
Alignment:
Q  34 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttc 113  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttc 1293814  T

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