View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-4 (Length: 216)
Name: Solexa-NF5814-4
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 34116292 - 34116500
Alignment:
| Q |
8 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggactaggagtctaggatgtaaaatcaaagagggtgacatgaaaaatcactttaatattaag |
107 |
Q |
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| T |
34116292 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggactaggagtctaggatgtaaaatcaaagagggtgacatgaaaaatcactttaatattaag |
34116391 |
T |
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| Q |
108 |
cattaaagacaattgaactcaaccaagtgatgacaaaatagaactctgcaagacatttgagctcaaccgaagatagttgaatccaacacaataactttct |
207 |
Q |
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| T |
34116392 |
cattaaagacaattgaactcatccaagtgatgacaaaatagaactctgcaagacatttgagctcaaccgaagatagttgaatccaacacaataactttct |
34116491 |
T |
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| Q |
208 |
tttacccac |
216 |
Q |
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||||||||| |
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| T |
34116492 |
tttacccac |
34116500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 34143183 - 34143391
Alignment:
| Q |
8 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggactaggagtctaggatgtaaaatcaaagagggtgacatgaaaaatcactttaatattaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34143183 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggtctaggagtctaggatataaaatcaaagagggtgacatgaaaaaacactttaatattaag |
34143282 |
T |
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| Q |
108 |
cattaaagacaattgaactcaaccaagtgatgacaaaatagaactctgcaagacatttgagctcaaccgaagatagttgaatccaacacaataactttct |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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| T |
34143283 |
catgaaagacaattgaactcaaccaagtgatgacaaaatagaactctgcaagacatttgagctcaactgaagatagttgaatccaacacagtaactttat |
34143382 |
T |
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| Q |
208 |
tttacccac |
216 |
Q |
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||||||||| |
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| T |
34143383 |
tttacccac |
34143391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 34155799 - 34156007
Alignment:
| Q |
8 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggactaggagtctaggatgtaaaatcaaagagggtgacatgaaaaatcactttaatattaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34155799 |
gtaatggggccaaaataaaggtgagatgatcctaaaggggtctaggagtctaggatataaaatcaaagagggtgacatgaaaaaacactttaatattaag |
34155898 |
T |
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| Q |
108 |
cattaaagacaattgaactcaaccaagtgatgacaaaatagaactctgcaagacatttgagctcaaccgaagatagttgaatccaacacaataactttct |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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| T |
34155899 |
catgaaagacaattgaactcaaccaagtgatgacaaaatagaactctgcaagacatttgagctcaactgaagatagttgaatccaacacagtaactttat |
34155998 |
T |
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| Q |
208 |
tttacccac |
216 |
Q |
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||||||||| |
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| T |
34155999 |
tttacccac |
34156007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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