View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-41 (Length: 124)

Name: Solexa-NF5814-41
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-41
Solexa-NF5814-41
[»] chr2 (1 HSPs)
chr2 (1-100)||(8474484-8474583)
[»] chr1 (3 HSPs)
chr1 (1-96)||(41556209-41556304)
chr1 (7-96)||(44179778-44179867)
chr1 (7-96)||(44206909-44206998)
[»] chr5 (6 HSPs)
chr5 (1-96)||(11496946-11497041)
chr5 (1-96)||(11541275-11541370)
chr5 (1-96)||(11504273-11504368)
chr5 (1-96)||(11511667-11511762)
chr5 (1-96)||(11519043-11519138)
chr5 (1-96)||(11526448-11526543)
[»] chr4 (1 HSPs)
chr4 (69-96)||(4860476-4860503)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8474484 - 8474583
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttgggtt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8474484 aacaagagggctggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccaaattggtttttgggtt 8474583  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 41556209 - 41556304
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    ||||||||||| |||||||| | ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  41556209 aacaagagggctggtgaattaagtgctgcagagttggataatattatgatagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 41556304  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 44179778 - 44179867
Alignment:
Q  7 agggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    ||||| |||||||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||| |||||||||||||||||||||    
T  44179778 agggctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttg 44179867  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 44206909 - 44206998
Alignment:
Q  7 agggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    ||||| |||||||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||| |||||||||||||||||||||    
T  44206909 agggctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttg 44206998  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11496946 - 11497041
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  11496946 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 11497041  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11541275 - 11541370
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  11541275 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 11541370  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11504273 - 11504368
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11504273 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11504368  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11511667 - 11511762
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11511667 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11511762  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11519043 - 11519138
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11519043 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11519138  T

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Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11526448 - 11526543
Alignment:
Q  1 aacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 96  Q
    |||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11526448 aacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11526543  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 96
Target Start/End: Complemental strand, 4860503 - 4860476
Alignment:
Q  69 tcaattcaaggttccagattggtttttg 96  Q
    ||||||||||||||||||||||||||||    
T  4860503 tcaattcaaggttccagattggtttttg 4860476  T

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