View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-50 (Length: 94)

Name: Solexa-NF5814-50
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-50
Solexa-NF5814-50
[»] chr2 (4 HSPs)
chr2 (8-93)||(13537812-13537897)
chr2 (33-90)||(13541856-13541913)
chr2 (29-86)||(13554678-13554735)
chr2 (33-90)||(13530952-13531009)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 1e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 13537897 - 13537812
Alignment:
Q  8 acaaccaagtatacattttacttaataattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtct 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13537897 acaaccaagtatacattttacttaataattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtct 13537812  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 13541913 - 13541856
Alignment:
Q  33 taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttgg 90  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  13541913 taattagggtttgccaaaacataaccctcaatggccttgataagtccagttcctttgg 13541856  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 13554735 - 13554678
Alignment:
Q  29 ttaataattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcct 86  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  13554735 ttaataatcaggatttgccaaaacgtaaccctcaatggccttgataagtccagttcct 13554678  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 13531009 - 13530952
Alignment:
Q  33 taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttgg 90  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  13531009 taattagggtttgccaagacgtagccctcaatagccttgataagaccagttcctttgg 13530952  T

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