View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-56 (Length: 56)

Name: Solexa-NF5814-56
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-56
Solexa-NF5814-56
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-56)||(4545-4600)
[»] chr4 (16 HSPs)
chr4 (1-56)||(24421174-24421229)
chr4 (1-56)||(24470494-24470549)
chr4 (1-53)||(24420838-24420890)
chr4 (1-53)||(24470689-24470741)
chr4 (1-56)||(24420598-24420653)
chr4 (1-56)||(24421366-24421421)
chr4 (1-56)||(24470302-24470357)
chr4 (3-56)||(24477457-24477510)
chr4 (1-56)||(24470973-24471028)
chr4 (1-56)||(24477284-24477339)
chr4 (7-56)||(24421324-24421373)
chr4 (7-56)||(24470350-24470399)
chr4 (7-56)||(24470542-24470591)
chr4 (3-53)||(24406393-24406443)
chr4 (3-53)||(24406495-24406545)
chr4 (1-47)||(24477503-24477549)
[»] chr2 (7 HSPs)
chr2 (4-53)||(41900538-41900587)
chr2 (4-56)||(41900346-41900398)
chr2 (1-56)||(41899959-41900014)
chr2 (1-56)||(41899911-41899966)
chr2 (1-56)||(41900007-41900062)
chr2 (4-55)||(41900154-41900205)
chr2 (1-44)||(41900295-41900338)
[»] chr1 (2 HSPs)
chr1 (1-56)||(11879490-11879545)
chr1 (1-56)||(11902134-11902189)


Alignment Details
Target: scaffold0879 (Bit Score: 52; Significance: 1e-21; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4600 - 4545
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4600 gacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgta 4545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24421174 - 24421229
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24421174 gacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgta 24421229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24470549 - 24470494
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24470549 gacttgtagacatatggaggaggaggtgaaggggaaggaggtggtggtgacttgta 24470494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24420838 - 24420890
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgactt 53  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  24420838 gacttgtaaacatatggaggaggaggggaaggggaaggaggtggtggtgactt 24420890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24470741 - 24470689
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgactt 53  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  24470741 gacttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgactt 24470689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24420598 - 24420653
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||| |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  24420598 gacttatagacatatggaggtggtggtgaaggggatggtggtggtggtgacttgta 24420653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24421366 - 24421421
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||||||||||||||||||||| || || || ||||||||||| ||||||||    
T  24421366 gacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgta 24421421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24470357 - 24470302
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||||||||||||||||||||| || || || ||||||||||| ||||||||    
T  24470357 gacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgta 24470302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 24477457 - 24477510
Alignment:
Q  3 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  24477457 cttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgta 24477510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24471028 - 24470973
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||    
T  24471028 gacttatagacgtatggagggggtggtgaaggggatggtggtggtggtgacttgta 24470973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24477284 - 24477339
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||||||||| || | |||||| |||||||| |||||||||||||| |||||    
T  24477284 gacttgtagacataaggtgaaggaggggaaggggatggaggtggtggtgatttgta 24477339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 24421324 - 24421373
Alignment:
Q  7 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  24421324 tagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgta 24421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24470399 - 24470350
Alignment:
Q  7 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  24470399 tagacatatggtgggggaggtgaaggtgatggaggaggtggtgacttgta 24470350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24470591 - 24470542
Alignment:
Q  7 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||| || ||||||||||| || ||||| ||||||||||||||    
T  24470591 tagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgta 24470542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 24406393 - 24406443
Alignment:
Q  3 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgactt 53  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||    
T  24406393 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgactt 24406443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 24406495 - 24406545
Alignment:
Q  3 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgactt 53  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||    
T  24406495 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgactt 24406545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24477503 - 24477549
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtgg 47  Q
    |||||||||||||||||||| |||||||| || || || ||||||||    
T  24477503 gacttgtagacatatggaggtggaggtgagggagatggtggtggtgg 24477549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 41900538 - 41900587
Alignment:
Q  4 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgactt 53  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||||    
T  41900538 ttgtagacatatggcggaggaggtgaaggagagggaggtggtggtgactt 41900587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 41900346 - 41900398
Alignment:
Q  4 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||||||||| |||||| ||||||| || ||||||||||||||||||||    
T  41900346 ttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgacttgta 41900398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41899959 - 41900014
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||    
T  41899959 gacttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggacttgta 41900014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41899911 - 41899966
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||  ||||||||||||| ||||| ||||| || |||||||| ||||||||    
T  41899911 gacttgtacgcatatggaggagggggtgacggggaaggcggtggtggggacttgta 41899966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41900007 - 41900062
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    ||||||||||||||||| || ||||||||||| || ||||| ||||| || |||||    
T  41900007 gacttgtagacatatggtggtggaggtgaaggagagggaggaggtggagagttgta 41900062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 41900154 - 41900205
Alignment:
Q  4 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgt 55  Q
    ||||||||||| || ||||||||||| || || ||| |||||||||||||||    
T  41900154 ttgtagacatacggtggaggaggtgagggagaaggatgtggtggtgacttgt 41900205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41900295 - 41900338
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtgg 44  Q
    |||||||||||||||||||| || |||||||| || ||||||||    
T  41900295 gacttgtagacatatggaggtggtggtgaaggagagggaggtgg 41900338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 28; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11879545 - 11879490
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||| ||||| ||||| || |||||||| || || |||||||||||||||||    
T  11879545 gacttgtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgta 11879490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11902189 - 11902134
Alignment:
Q  1 gacttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgta 56  Q
    |||||||| || || ||||| || ||||| ||||| ||||||||||||||||||||    
T  11902189 gacttgtacacgtaaggaggtgggggtgatggggatggaggtggtggtgacttgta 11902134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University