View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-7 (Length: 186)
Name: Solexa-NF5814-7
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 7e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 7e-54
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 27750999 - 27751121
Alignment:
| Q |
64 |
cttttaatggctgacaagaaaaataaacacttaatcgggctataatctcctcttatttcaattatacattcacctatcgcccttcatagatcttgatata |
163 |
Q |
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| T |
27750999 |
cttttaatggctgaaaagaaaagtaaacacttaatcgggctataaactcctcttatttcaattatacattcacctatcgcccttcatagatcttgatata |
27751098 |
T |
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| Q |
164 |
gaaatgataatgggtgatcatct |
186 |
Q |
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| T |
27751099 |
gaactgataatgggtgatcatct |
27751121 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 26653212 - 26653263
Alignment:
| Q |
111 |
tcctcttatttcaattatacattcacctatcgcccttcatagatcttgatat |
162 |
Q |
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| T |
26653212 |
tccttttattccaattataccttcacctatcacccttcatggatcttgatat |
26653263 |
T |
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Target: chr8 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 14922057 - 14922096
Alignment:
| Q |
103 |
ctataatctcctcttatttcaattatacattcacctatcg |
142 |
Q |
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| T |
14922057 |
ctataaactcctcatatttcaattataccttcacctatcg |
14922096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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