View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-11 (Length: 108)

Name: Solexa-NF5815-11
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-11
Solexa-NF5815-11
[»] chr5 (19 HSPs)
chr5 (1-56)||(37704295-37704350)
chr5 (52-106)||(37704327-37704381)
chr5 (1-55)||(37380802-37380856)
chr5 (2-56)||(37411784-37411838)
chr5 (5-56)||(37391419-37391470)
chr5 (5-56)||(37441575-37441626)
chr5 (1-56)||(37534727-37534782)
chr5 (2-48)||(37698421-37698467)
chr5 (53-106)||(37698452-37698505)
chr5 (1-56)||(37595957-37596015)
chr5 (1-48)||(37399289-37399336)
chr5 (1-56)||(37641508-37641563)
chr5 (1-56)||(37713251-37713306)
chr5 (1-43)||(37825540-37825582)
chr5 (53-102)||(37391389-37391438)
chr5 (59-104)||(37441605-37441650)
chr5 (61-106)||(37534759-37534804)
chr5 (61-106)||(37595992-37596037)
chr5 (5-48)||(37430388-37430431)
[»] chr4 (1 HSPs)
chr4 (1-57)||(24216214-24216270)
[»] chr3 (1 HSPs)
chr3 (61-104)||(14554717-14554760)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37704295 - 37704350
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704295 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 37704350  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 37704381 - 37704327
Alignment:
Q  52 aaaatgcggtccttttttattctattgccttattttacttttcgcttgttcttgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37704381 aaaatgcggtccttttttattctattgccttattttacttttcacttgttcttgt 37704327  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37380856 - 37380802
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaa 55  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  37380856 agtgtgggaagtaaaatgagtaagcaacaacaacaagaacaagtgaaaggtaaaa 37380802  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 37411838 - 37411784
Alignment:
Q  2 gtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||| |||||||    
T  37411838 gtgtaggaagtaaaatgagtaaacagcagcaacaagaacaagtgaaaggtaaaat 37411784  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 37391470 - 37391419
Alignment:
Q  5 taggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    |||||||||||||||||||||| ||| |||| |||||||||||| |||||||    
T  37391470 taggaagtaaaatgagtaagcaacaacaacatgaacaagtgaaaggtaaaat 37391419  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 37441575 - 37441626
Alignment:
Q  5 taggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    |||||||||||||||||||||||||| || ||||||| |||||| |||||||    
T  37441575 taggaagtaaaatgagtaagcagcaacaagaagaacatgtgaaaggtaaaat 37441626  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37534727 - 37534782
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    ||||||||||||||||||||||| || ||| |||||||| |||||||| |||||||    
T  37534727 agtgtaggaagtaaaatgagtaatcaacaacaacaagaaaaagtgaaaggtaaaat 37534782  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 37698421 - 37698467
Alignment:
Q  2 gtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaa 48  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  37698421 gtgtaggaagtaaaatgagtaagcaacaacaacaagaaaaagtgaaa 37698467  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 37698505 - 37698452
Alignment:
Q  53 aaatgcggtccttttttattctattgccttattttacttttcgcttgttcttgt 106  Q
    ||||| ||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgt 37698452  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37595957 - 37596015
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcag---caataacaagaacaagtgaaaagtaaaat 56  Q
    |||||||||||||||||||||||||||   ||| |||||||| |||||||| |||||||    
T  37595957 agtgtaggaagtaaaatgagtaagcagcaacaacaacaagaaaaagtgaaaggtaaaat 37596015  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37399336 - 37399289
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaa 48  Q
    |||||| |||||||||||||||| || ||| |||||||||||||||||    
T  37399336 agtgtatgaagtaaaatgagtaatcaacaacaacaagaacaagtgaaa 37399289  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37641508 - 37641563
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    ||||||||||||||||||||||| || ||| ||||| || |||||||| |||||||    
T  37641508 agtgtaggaagtaaaatgagtaatcaacaacaacaacaagaagtgaaaggtaaaat 37641563  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37713251 - 37713306
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaat 56  Q
    ||||| |||||||||||||||||||| ||| ||| |||| |||||||| |||||||    
T  37713251 agtgtgggaagtaaaatgagtaagcaacaacaacgagaagaagtgaaaggtaaaat 37713306  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37825540 - 37825582
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaag 43  Q
    ||||||||||||||||||||||| || ||| ||||||||||||    
T  37825540 agtgtaggaagtaaaatgagtaatcaacaacaacaagaacaag 37825582  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 37391389 - 37391438
Alignment:
Q  53 aaatgcggtccttttttattctattgccttattttacttttcgcttgttc 102  Q
    ||||| ||||||| |||||| |||||||||||||||| |||| |||||||    
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttc 37391438  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 37441650 - 37441605
Alignment:
Q  59 ggtccttttttattctattgccttattttacttttcgcttgttctt 104  Q
    |||||||||||||| |||||||||||||||| |||| | |||||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttctt 37441605  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37534804 - 37534759
Alignment:
Q  61 tccttttttattctattgccttattttacttttcgcttgttcttgt 106  Q
    ||||||||||||| ||||||||||||||| |||| ||| |||||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgt 37534759  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37596037 - 37595992
Alignment:
Q  61 tccttttttattctattgccttattttacttttcgcttgttcttgt 106  Q
    ||||||||||||| ||||||||||||||| |||| ||| |||||||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgt 37595992  T

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Target: chr5; HSP #19
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 37430388 - 37430431
Alignment:
Q  5 taggaagtaaaatgagtaagcagcaataacaagaacaagtgaaa 48  Q
    |||||||||||| |||| |||||||  |||||||||||||||||    
T  37430388 taggaagtaaaaagagttagcagcatcaacaagaacaagtgaaa 37430431  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24216270 - 24216214
Alignment:
Q  1 agtgtaggaagtaaaatgagtaagcagcaataacaagaacaagtgaaaagtaaaatg 57  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||| || |||||    
T  24216270 agtgtaagaagtaaaatgagtaagcaacaacaacatgaacaagtgaaaggtcaaatg 24216214  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 14554760 - 14554717
Alignment:
Q  61 tccttttttattctattgccttattttacttttcgcttgttctt 104  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttctt 14554717  T

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