View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-13 (Length: 96)

Name: Solexa-NF5815-13
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-13
Solexa-NF5815-13
[»] chr3 (1 HSPs)
chr3 (2-88)||(45817944-45818030)
[»] chr1 (1 HSPs)
chr1 (2-88)||(5786342-5786428)
[»] chr8 (1 HSPs)
chr8 (2-88)||(23586430-23586516)
[»] chr4 (1 HSPs)
chr4 (2-88)||(50876927-50877013)
[»] chr2 (1 HSPs)
chr2 (9-76)||(40627064-40627131)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 45817944 - 45818030
Alignment:
Q  2 ataggacagagacatgatatgattagaagatggataaggatattataaaataataacattatagacacttatcatatcttacgtttg 88  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45817944 ataggacagagacatgatatgattagaagttggataaggatattataaaataataacatgatagacacttatcatatcttacgtttg 45818030  T

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Target: chr1 (Bit Score: 43; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 5786428 - 5786342
Alignment:
Q  2 ataggacagagacatgatatgattagaagatggataaggatattataaaataataacattatagacacttatcatatcttacgtttg 88  Q
    |||||| | |||||||||| ||||||||| ||||||||||||  |||  |||| ||||| ||| |||||||||||||||||||||||    
T  5786428 ataggataaagacatgataggattagaagctggataaggatagaataggataacaacatgataaacacttatcatatcttacgtttg 5786342  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 23586516 - 23586430
Alignment:
Q  2 ataggacagagacatgatatgattagaagatggataaggatattataaaataataacattatagacacttatcatatcttacgtttg 88  Q
    |||||| |||||||||||| ||||| ||| ||||||| ||||  |||  |||| ||||| ||| ||| |||||||||||||||||||    
T  23586516 ataggatagagacatgataggattataagttggataatgataggataggataacaacatgataaacagttatcatatcttacgtttg 23586430  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 50877013 - 50876927
Alignment:
Q  2 ataggacagagacatgatatgattagaagatggataaggatattataaaataataacattatagacacttatcatatcttacgtttg 88  Q
    |||||| ||||||||||| |||||| ||| ||||||||||||| |||  ||||| |||| ||| |||| ||||||||| | ||||||    
T  50877013 ataggatagagacatgatgtgattataagttggataaggatatgatacgataatgacatgatatacacctatcatatcatgcgtttg 50876927  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 40627131 - 40627064
Alignment:
Q  9 agagacatgatatgattagaagatggataaggatattataaaataataacattatagacacttatcat 76  Q
    |||||||| ||| ||||||||| ||||||||||||| |||  ||| |||||  |||||||||||||||    
T  40627131 agagacatcataggattagaagttggataaggatataatatgatagtaacaagatagacacttatcat 40627064  T

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