View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-14 (Length: 76)

Name: Solexa-NF5815-14
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-14
Solexa-NF5815-14
[»] chr2 (1 HSPs)
chr2 (1-76)||(24923137-24923212)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-76)||(126082-126157)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-76)||(25569-25644)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-76)||(386386-386461)
[»] chr3 (4 HSPs)
chr3 (1-76)||(12494292-12494367)
chr3 (1-76)||(12025273-12025348)
chr3 (9-55)||(12848480-12848526)
chr3 (15-76)||(13035710-13035771)
[»] chr1 (2 HSPs)
chr1 (1-76)||(21302713-21302788)
chr1 (1-72)||(22798241-22798312)
[»] scaffold0046 (1 HSPs)
scaffold0046 (1-76)||(59506-59581)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-72)||(47986-48057)
[»] scaffold0282 (1 HSPs)
scaffold0282 (1-72)||(635-706)
[»] scaffold0241 (1 HSPs)
scaffold0241 (1-72)||(21390-21461)
[»] scaffold0193 (1 HSPs)
scaffold0193 (1-72)||(30499-30570)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-72)||(81342-81413)
[»] chr5 (1 HSPs)
chr5 (1-72)||(21517212-21517283)
[»] chr4 (1 HSPs)
chr4 (1-72)||(14740416-14740487)
[»] scaffold0239 (1 HSPs)
scaffold0239 (1-76)||(23164-23239)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24923137 - 24923212
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24923137 cagatacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcgaaggcatccagagg 24923212  T

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Target: scaffold0026 (Bit Score: 60; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 126157 - 126082
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  126157 cagatacattggaagatctccccgtacttctagaaaggagaatgtcgctggctaagaggtcaaaggcatccagagg 126082  T

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Target: scaffold0107 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25569 - 25644
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| |||||||||||||| || |||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  25569 cagatacattggaagatcttcctgtactcatagaaaggagaatgtcgttggctagaacgtcaaaggcatccagagg 25644  T

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Target: scaffold0001 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 386386 - 386461
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  386386 cagatacattggaagatcttcctgtacttctagaaaggagaatgtcgttagctagaaggtcaaaggcatccagagg 386461  T

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Target: chr3 (Bit Score: 52; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12494292 - 12494367
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  12494292 cagatacattagaggatctccccgtactcctagaaaggagaatgtcgttggctagaaggtcaaaagcgtccagagg 12494367  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12025348 - 12025273
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||| || |||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  12025348 cagatacattagaggatcgccccgtactcctagaaaggagaatgtcgttggctagaagatcaaaggcgtccagagg 12025273  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 12848526 - 12848480
Alignment:
Q  9 ttggaagatctccccgtactcctagaaaggagaatgtcgttggctag 55  Q
    ||||| |||| ||| |||||||||||||||||||||||||| |||||    
T  12848526 ttggaggatcgcccagtactcctagaaaggagaatgtcgttagctag 12848480  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 13035710 - 13035771
Alignment:
Q  15 gatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||||||||||||||||||| |||| ||||||||| |  |||||||| || |||||    
T  13035710 gatcgccccgtactcctagaaaggaggatgttgttggctagaaaatcaaaggcgtctagagg 13035771  T

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Target: chr1 (Bit Score: 52; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 21302713 - 21302788
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  21302713 cagatacattagaggatctccccgtactcctagaaagaagaatgtcattggctagaaggtcaaaggcatccagagg 21302788  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 22798312 - 22798241
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| |||||| |||| ||||| |||||||||||||||||  |||||| |||||||||||||||||    
T  22798312 cagacacattagaagatttccctgtacttctagaaaggagaatgtcactggctaagaggtcaaaggcatcca 22798241  T

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Target: scaffold0046 (Bit Score: 48; Significance: 4e-19; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 59506 - 59581
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| || |||||    
T  59506 cagatacattagaagatctccccgcactcctagaaaggagaatgttgttggctagaaggtcaaaggcttctagagg 59581  T

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Target: scaffold0081 (Bit Score: 44; Significance: 9e-17; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48057 - 47986
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||||||  |||||| |||||||||||||||||    
T  48057 cagacacattagaagatctccctgtacttctagaaaggagaatgtcactggctaagaggtcaaaggcatcca 47986  T

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Target: scaffold0282 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 706 - 635
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| |||||| |||| ||||| |||||||||||||||||  |||||| |||||||||||||||||    
T  706 cagacacattagaagatttccctgtacttctagaaaggagaatgtcactggctaagaggtcaaaggcatcca 635  T

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Target: scaffold0241 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21390 - 21461
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| ||||||||||| ||||| ||||| |||||||||||  |||||| |||||||||||||||||    
T  21390 cagacacattagaagatctccctgtacttctagagaggagaatgtcactggctaagaggtcaaaggcatcca 21461  T

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Target: scaffold0193 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30570 - 30499
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| ||||||||||| ||||| || ||||||||||||||  |||||| |||||||||||||||||    
T  30570 cagacacattagaagatctccctgtacttctcgaaaggagaatgtcactggctaagaggtcaaaggcatcca 30499  T

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Target: scaffold0023 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 81342 - 81413
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||||||  |||||| ||||||||||| |||||    
T  81342 cagacacattagaagatctccctgtacttctagaaaggagaatgtcactggctaagaggtcaaaggaatcca 81413  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21517212 - 21517283
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| ||||||||||| || || |||||||||||||||||  |||||| |||||||||||||||||    
T  21517212 cagacacattagaagatctccctgtgcttctagaaaggagaatgtcactggctaagaggtcaaaggcatcca 21517283  T

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Target: chr4 (Bit Score: 36; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14740487 - 14740416
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatcca 72  Q
    |||| ||||| |||||| || | ||||| |||||||||||||||||  |||||| |||||||||||||||||    
T  14740487 cagacacattagaagatttctctgtacttctagaaaggagaatgtcactggctaagaggtcaaaggcatcca 14740416  T

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Target: scaffold0239 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23239 - 23164
Alignment:
Q  1 cagagacattggaagatctccccgtactcctagaaaggagaatgtcgttggctaggaggtcaaaggcatccagagg 76  Q
    |||| ||||| || |||| |||||| |||||| |||||||| ||||||||||||| || |||||||| || |||||    
T  23239 cagatacattagaggatcgccccgtcctcctaaaaaggagagtgtcgttggctagaagatcaaaggcgtctagagg 23164  T

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