View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5815-19 (Length: 61)
Name: Solexa-NF5815-19
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5815-19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 43549991 - 43550047
Alignment:
| Q |
5 |
cataggcaactctcaccaagaaaactaaagcgtcataccatccatatctcacagcta |
61 |
Q |
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| T |
43549991 |
cataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagcta |
43550047 |
T |
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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 43554005 - 43554048
Alignment:
| Q |
18 |
caccaagaaaactaaagcgtcataccatccatatctcacagcta |
61 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||| |||| |
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| T |
43554005 |
caccaagaaaaccaaagcatcatagcatccatatctcacggcta |
43554048 |
T |
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