View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-2 (Length: 189)

Name: Solexa-NF5815-2
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-2
Solexa-NF5815-2
[»] chr7 (2 HSPs)
chr7 (6-66)||(17015894-17015955)
chr7 (50-102)||(5651054-5651106)
[»] chr2 (5 HSPs)
chr2 (6-66)||(22934706-22934767)
chr2 (6-66)||(22954564-22954625)
chr2 (6-66)||(22940669-22940730)
chr2 (48-102)||(39650156-39650210)
chr2 (48-86)||(44370795-44370833)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-72)||(44126-44197)
[»] chr3 (7 HSPs)
chr3 (50-106)||(15923800-15923856)
chr3 (50-104)||(15578949-15579003)
chr3 (50-104)||(15609993-15610047)
chr3 (145-189)||(19833935-19833979)
chr3 (50-106)||(15909631-15909687)
chr3 (50-81)||(46392908-46392939)
chr3 (50-81)||(46400656-46400687)
[»] chr6 (3 HSPs)
chr6 (145-189)||(15665782-15665826)
chr6 (48-86)||(22060239-22060277)
chr6 (50-83)||(22632230-22632263)
[»] chr4 (3 HSPs)
chr4 (145-189)||(15567365-15567409)
chr4 (145-189)||(15580010-15580054)
chr4 (70-113)||(15879594-15879637)
[»] scaffold1721 (1 HSPs)
scaffold1721 (50-101)||(1260-1311)
[»] scaffold0077 (1 HSPs)
scaffold0077 (145-188)||(147-190)
[»] scaffold0484 (1 HSPs)
scaffold0484 (146-188)||(11054-11096)
[»] scaffold0182 (1 HSPs)
scaffold0182 (48-94)||(5764-5810)
[»] scaffold0014 (1 HSPs)
scaffold0014 (145-189)||(4277-4321)
[»] chr8 (3 HSPs)
chr8 (50-104)||(39631033-39631086)
chr8 (50-104)||(39640581-39640634)
chr8 (50-83)||(15449794-15449827)
[»] scaffold0770 (1 HSPs)
scaffold0770 (70-101)||(1391-1422)
[»] scaffold0029 (1 HSPs)
scaffold0029 (70-101)||(99695-99726)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 17015955 - 17015894
Alignment:
Q  6 atacctttttattctcctcaagccacagcttttatgctcgta-ttaacaaaccctagcctca 66  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17015955 atacctttttcttctcctcaagccacagcttttatgctcgtatttaacaaaccctagcctca 17015894  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 5651106 - 5651054
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaa 102  Q
    |||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  5651106 aacaaaccctagcctcagcccagcactataaatatagagcctgcacaacacaa 5651054  T

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Target: chr2 (Bit Score: 50; Significance: 7e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 22934706 - 22934767
Alignment:
Q  6 atacctttttattctcctcaagccacagcttttatgctcgta-ttaacaaaccctagcctca 66  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22934706 atacctttttcttctcctcaagccacagcttttatgctcgtatttaacaaaccctagcctca 22934767  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 22954564 - 22954625
Alignment:
Q  6 atacctttttattctcctcaagccacagcttttatgctcgta-ttaacaaaccctagcctca 66  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22954564 atacctttttcttctcctcaagccacagcttttatgctcgtatttaacaaaccctagcctca 22954625  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 22940669 - 22940730
Alignment:
Q  6 atacctttttattctcctcaagccacagcttttatgctcgta-ttaacaaaccctagcctca 66  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  22940669 atacctttttcttctcctcaagccacagcttttatgctcgtatttaacaaaccctggcctca 22940730  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 39650156 - 39650210
Alignment:
Q  48 ttaacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaa 102  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  39650156 ttaacaaaccctagcctcagcccagcactataaatatagagcctgcacaacacaa 39650210  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 44370795 - 44370833
Alignment:
Q  48 ttaacaaaccctagcctcagcccagcactataaatacat 86  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44370795 ttaacaaaccctagcctcagcccagtactataaatacat 44370833  T

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Target: scaffold0067 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44197 - 44126
Alignment:
Q  1 cagagatacctttttattctcctcaagccacagcttttatgctcgtattaacaaaccctagcctcagcccag 72  Q
    |||| |||| ||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  44197 cagaaatacatttttcttctcctcaagccacatcttttatgctcttatcaacaaaccctagcctcagcccag 44126  T

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Target: chr3 (Bit Score: 45; Significance: 7e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 15923800 - 15923856
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaaga 106  Q
    ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||    
T  15923800 aacaaaccctagcctcagcccagcactataaatacttaacctgcagagcacaaaaga 15923856  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 15579003 - 15578949
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaa 104  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  15579003 aacaaaccctagcctcagcccagcactataaatacagaacctgcagagcacaaaa 15578949  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 15610047 - 15609993
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaa 104  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  15610047 aacaaaccctagcctcagcccagcactataaatacagaacctgcagagcacaaaa 15609993  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 19833935 - 19833979
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  19833935 gcatagagaaagccagagacaacagagacacacataagcagccga 19833979  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 15909631 - 15909687
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaaga 106  Q
    ||||||||||||||||||||||||| ||||||||| || |||||| | |||||||||    
T  15909631 aacaaaccctagcctcagcccagcaatataaatacttaacctgcaaagcacaaaaga 15909687  T

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Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 46392939 - 46392908
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaa 81  Q
    ||||||||||| ||||||||||||||||||||    
T  46392939 aacaaaccctaacctcagcccagcactataaa 46392908  T

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Target: chr3; HSP #7
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 46400687 - 46400656
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaa 81  Q
    ||||||||||| ||||||||||||||||||||    
T  46400687 aacaaaccctaacctcagcccagcactataaa 46400656  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 15665826 - 15665782
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  15665826 gcatagagaaagccagagacaacagagacacacataagcagccga 15665782  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 22060239 - 22060277
Alignment:
Q  48 ttaacaaaccctagcctcagcccagcactataaatacat 86  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  22060239 ttaacaaaccctagcctcagcccagtactataaatacat 22060277  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 22632230 - 22632263
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaata 83  Q
    ||||||||||||||||| ||||||||||||||||    
T  22632230 aacaaaccctagcctcaacccagcactataaata 22632263  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 15567409 - 15567365
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  15567409 gcatagagaaagccagagacaacagagacacacataagcagccga 15567365  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 15580054 - 15580010
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  15580054 gcatagagaaagccagagacaacagagacacacataagcagccga 15580010  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 15879637 - 15879594
Alignment:
Q  70 cagcactataaatacatagcctgcagaacacaaaagacagacag 113  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||    
T  15879637 cagcactataaatacataacctgcacaacacaacagacacacag 15879594  T

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Target: scaffold1721 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1721
Description:

Target: scaffold1721; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 1260 - 1311
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacaca 101  Q
    ||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  1260 aacaaaccctaacatcagcccagcactataaatacataacctgcagaacaca 1311  T

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Target: scaffold0077 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 147 - 190
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccg 188  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  147 gcatagagaaagccagagacaacagagacacacataagcagccg 190  T

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Target: scaffold0484 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 11096 - 11054
Alignment:
Q  146 catagagaaagccagagacaacagagacacatataagcagccg 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  11096 catagagaaagccagagacaacagagacacacataagcagccg 11054  T

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Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 5764 - 5810
Alignment:
Q  48 ttaacaaaccctagcctcagcccagcactataaatacatagcctgca 94  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||    
T  5764 ttaacaaaccctagcctcagcccagcactataaatatagagcctgca 5810  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 4277 - 4321
Alignment:
Q  145 gcatagagaaagccagagacaacagagacacatataagcagccga 189  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  4277 gcatatagaaagccagagacaacagagacacacataagcagccga 4321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 39631086 - 39631033
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaa 104  Q
    |||||||||||||||||||||||||||||||||| | | |||||| |||||||||    
T  39631086 aacaaaccctagcctcagcccagcactataaatagaga-cctgcacaacacaaaa 39631033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 39640634 - 39640581
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaatacatagcctgcagaacacaaaa 104  Q
    |||||||||||||||||||||||||||||||||| | | |||||| |||||||||    
T  39640634 aacaaaccctagcctcagcccagcactataaatagaga-cctgcacaacacaaaa 39640581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 15449827 - 15449794
Alignment:
Q  50 aacaaaccctagcctcagcccagcactataaata 83  Q
    ||||||||||||||||||||||||||||||||||    
T  15449827 aacaaaccctagcctcagcccagcactataaata 15449794  T

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Target: scaffold0770 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 70 - 101
Target Start/End: Original strand, 1391 - 1422
Alignment:
Q  70 cagcactataaatacatagcctgcagaacaca 101  Q
    |||||||||||||||||| |||||||||||||    
T  1391 cagcactataaatacataacctgcagaacaca 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 70 - 101
Target Start/End: Original strand, 99695 - 99726
Alignment:
Q  70 cagcactataaatacatagcctgcagaacaca 101  Q
    |||||||||||||||||| |||||||||||||    
T  99695 cagcactataaatacataacctgcagaacaca 99726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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