View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-22 (Length: 51)

Name: Solexa-NF5815-22
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-22
Solexa-NF5815-22
[»] chr6 (11 HSPs)
chr6 (1-51)||(31748092-31748142)
chr6 (1-51)||(11426076-11426126)
chr6 (1-51)||(13234037-13234087)
chr6 (2-51)||(19759924-19759973)
chr6 (1-51)||(12576410-12576460)
chr6 (2-51)||(7049381-7049430)
chr6 (1-51)||(20845143-20845193)
chr6 (1-51)||(23843353-23843403)
chr6 (2-51)||(16913463-16913511)
chr6 (1-51)||(548795-548845)
chr6 (1-51)||(32457781-32457830)
[»] chr2 (31 HSPs)
chr2 (1-51)||(5930558-5930608)
chr2 (1-51)||(3465064-3465114)
chr2 (1-51)||(16879894-16879944)
chr2 (1-51)||(16992027-16992077)
chr2 (1-51)||(25771580-25771630)
chr2 (1-51)||(27024068-27024118)
chr2 (1-51)||(27191266-27191316)
chr2 (1-51)||(27841080-27841130)
chr2 (1-51)||(38822207-38822257)
chr2 (1-51)||(41176993-41177043)
chr2 (1-51)||(43929229-43929279)
chr2 (1-49)||(43567008-43567056)
chr2 (4-51)||(36508067-36508114)
chr2 (1-51)||(7640285-7640335)
chr2 (1-51)||(25516627-25516677)
chr2 (1-51)||(44951554-44951604)
chr2 (1-37)||(44167654-44167690)
chr2 (5-51)||(6090029-6090075)
chr2 (1-50)||(16720778-16720827)
chr2 (1-50)||(24500622-24500671)
chr2 (1-37)||(15673911-15673947)
chr2 (1-36)||(7443510-7443545)
chr2 (1-36)||(10589230-10589265)
chr2 (1-36)||(19580946-19580981)
chr2 (1-33)||(4878683-4878715)
chr2 (1-37)||(37883788-37883824)
chr2 (1-36)||(19953705-19953740)
chr2 (2-37)||(26491438-26491473)
chr2 (2-37)||(40125525-40125560)
chr2 (1-27)||(3390567-3390593)
chr2 (1-27)||(3603120-3603146)
[»] chr1 (26 HSPs)
chr1 (1-49)||(38646719-38646767)
chr1 (1-51)||(22344841-22344891)
chr1 (1-51)||(23257223-23257273)
chr1 (1-51)||(4564651-4564701)
chr1 (1-51)||(6212843-6212893)
chr1 (1-51)||(14717199-14717249)
chr1 (1-51)||(23320575-23320625)
chr1 (1-51)||(38644726-38644776)
chr1 (1-51)||(630713-630763)
chr1 (1-51)||(5832369-5832419)
chr1 (1-51)||(12967661-12967711)
chr1 (1-51)||(21326608-21326658)
chr1 (1-51)||(36621487-36621537)
chr1 (1-51)||(44562678-44562728)
chr1 (1-51)||(45659149-45659199)
chr1 (1-50)||(28213183-28213232)
chr1 (1-50)||(33703440-33703489)
chr1 (1-36)||(1768100-1768135)
chr1 (2-37)||(27469651-27469686)
chr1 (1-36)||(32539134-32539169)
chr1 (5-51)||(40992447-40992493)
chr1 (1-51)||(49651979-49652029)
chr1 (1-50)||(10264844-10264893)
chr1 (1-50)||(26199715-26199764)
chr1 (7-50)||(44513932-44513975)
chr1 (1-28)||(52752158-52752185)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-51)||(12132-12182)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-51)||(244771-244821)
[»] chr8 (17 HSPs)
chr8 (1-51)||(9270156-9270206)
chr8 (1-51)||(44295451-44295501)
chr8 (1-51)||(8054736-8054786)
chr8 (1-51)||(16996818-16996868)
chr8 (1-51)||(31874219-31874269)
chr8 (1-51)||(37129604-37129654)
chr8 (2-51)||(32412926-32412975)
chr8 (1-51)||(5457206-5457256)
chr8 (1-50)||(12248644-12248693)
chr8 (1-36)||(32256665-32256700)
chr8 (5-51)||(32104767-32104813)
chr8 (1-38)||(9992802-9992839)
chr8 (1-33)||(31713023-31713055)
chr8 (7-34)||(5328095-5328122)
chr8 (4-51)||(14115757-14115804)
chr8 (1-50)||(23766874-23766924)
chr8 (1-51)||(36545710-36545760)
[»] chr7 (21 HSPs)
chr7 (1-51)||(24470528-24470578)
chr7 (1-51)||(24475476-24475526)
chr7 (1-51)||(40476842-40476892)
chr7 (1-51)||(40775402-40775452)
chr7 (1-51)||(47749869-47749919)
chr7 (1-51)||(7986027-7986077)
chr7 (1-51)||(8611553-8611603)
chr7 (1-51)||(11001978-11002028)
chr7 (1-51)||(26017587-26017637)
chr7 (1-51)||(37399733-37399783)
chr7 (1-51)||(49167060-49167110)
chr7 (1-51)||(30992752-30992802)
chr7 (6-51)||(42490843-42490888)
chr7 (1-36)||(43483735-43483770)
chr7 (1-51)||(135074-135124)
chr7 (5-51)||(43807079-43807125)
chr7 (1-50)||(28015492-28015541)
chr7 (5-50)||(39090227-39090272)
chr7 (1-51)||(8319450-8319500)
chr7 (17-51)||(19895613-19895647)
chr7 (1-51)||(25855149-25855199)
[»] chr5 (19 HSPs)
chr5 (1-51)||(4070686-4070736)
chr5 (1-51)||(29310283-29310333)
chr5 (1-51)||(35906404-35906454)
chr5 (1-51)||(4726857-4726907)
chr5 (1-51)||(6887107-6887157)
chr5 (1-51)||(31645964-31646014)
chr5 (2-51)||(28618738-28618787)
chr5 (1-37)||(34893887-34893923)
chr5 (1-50)||(33486499-33486548)
chr5 (2-50)||(18472656-18472704)
chr5 (1-51)||(10924063-10924112)
chr5 (1-35)||(13007827-13007861)
chr5 (2-51)||(9034871-9034920)
chr5 (1-38)||(19645983-19646020)
chr5 (1-50)||(20270849-20270898)
chr5 (1-50)||(41554622-41554671)
chr5 (1-37)||(37425159-37425195)
chr5 (1-36)||(6647857-6647892)
chr5 (1-35)||(13079280-13079314)
[»] chr4 (24 HSPs)
chr4 (1-51)||(4634418-4634468)
chr4 (1-51)||(9661988-9662038)
chr4 (1-51)||(14542441-14542491)
chr4 (1-51)||(9474468-9474518)
chr4 (1-51)||(23067777-23067827)
chr4 (1-51)||(30470052-30470102)
chr4 (1-51)||(32189115-32189165)
chr4 (1-51)||(46716823-46716873)
chr4 (1-51)||(54420670-54420720)
chr4 (1-51)||(41486710-41486760)
chr4 (1-50)||(29474258-29474307)
chr4 (1-36)||(40859809-40859844)
chr4 (1-51)||(53903716-53903766)
chr4 (1-50)||(14346566-14346615)
chr4 (1-50)||(15729911-15729960)
chr4 (1-50)||(38434734-38434783)
chr4 (1-50)||(43156911-43156960)
chr4 (3-48)||(50003108-50003153)
chr4 (1-50)||(51646229-51646278)
chr4 (7-50)||(4959503-4959546)
chr4 (1-36)||(16992007-16992042)
chr4 (4-51)||(37869346-37869393)
chr4 (1-47)||(31601291-31601337)
chr4 (1-51)||(42972173-42972223)
[»] chr3 (24 HSPs)
chr3 (1-51)||(29182537-29182587)
chr3 (1-51)||(41882339-41882389)
chr3 (1-51)||(43029818-43029868)
chr3 (1-51)||(50519918-50519968)
chr3 (1-49)||(3088595-3088643)
chr3 (3-51)||(54240223-54240271)
chr3 (1-51)||(1165325-1165375)
chr3 (1-51)||(22286680-22286730)
chr3 (1-51)||(28995238-28995288)
chr3 (1-51)||(33977854-33977904)
chr3 (1-36)||(14741270-14741305)
chr3 (7-51)||(45664362-45664406)
chr3 (1-36)||(913260-913295)
chr3 (1-36)||(22844187-22844222)
chr3 (1-36)||(40797168-40797203)
chr3 (1-36)||(47914538-47914573)
chr3 (1-51)||(7656444-7656494)
chr3 (7-49)||(43839448-43839490)
chr3 (1-50)||(39340334-39340383)
chr3 (2-50)||(2598215-2598263)
chr3 (1-37)||(40461938-40461974)
chr3 (1-51)||(11846684-11846733)
chr3 (5-51)||(20200987-20201033)
chr3 (5-51)||(20203169-20203215)
[»] scaffold0722 (1 HSPs)
scaffold0722 (1-51)||(5455-5505)
[»] scaffold0011 (1 HSPs)
scaffold0011 (3-51)||(11151-11199)
[»] scaffold0018 (1 HSPs)
scaffold0018 (2-36)||(137002-137036)
[»] scaffold0665 (1 HSPs)
scaffold0665 (4-51)||(1056-1103)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 9e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-19
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31748092 - 31748142
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31748092 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcatgtatttga 31748142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11426076 - 11426126
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11426076 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 11426126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13234087 - 13234037
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13234087 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 13234037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 9e-16
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19759924 - 19759973
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  19759924 tcgtctttgtgcgacgttgtttgtatttcttgtttctctcatgtatttga 19759973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12576460 - 12576410
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  12576460 gtcgtctttgtgcgacgttgtttgttttccttgtttctctcaggtatttga 12576410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 7049381 - 7049430
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  7049381 tcgtctttgtgagacgttgtttgtttttcttgtttctctcaggtatttga 7049430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20845143 - 20845193
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||| |||||||||||||||||||| |||  |||||||    
T  20845143 gtcgtctttgtgcgacgctgtttgtttttcttgtttctctcagatatttga 20845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23843403 - 23843353
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| | | ||||||||    
T  23843403 gtcgtctttgtgcgacgttgtttgtctttcttgtttctcttaggtatttga 23843353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 16913463 - 16913511
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  16913463 tcgtccttgtgcgacgttgtttgtttttc-tgtttctctcatgtatttga 16913511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 548845 - 548795
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||  || |||||||||| |||||||||||||||||| ||||||||    
T  548845 gtcgtcttcatgtgacgttgtttctttttcttgtttctatcaggtatttga 548795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32457781 - 32457830
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||  ||||||||||||| ||| ||||||||    
T  32457781 gtcgtctttgtgcgacattgttt-attttcttgtttctctcaggtatttga 32457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-19; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-19
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5930558 - 5930608
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5930558 gtcgtttttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 5930608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3465064 - 3465114
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  3465064 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaagtatttga 3465114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16879944 - 16879894
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  16879944 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16992077 - 16992027
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  16992077 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 16992027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25771580 - 25771630
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  25771580 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 25771630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27024118 - 27024068
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  27024118 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 27024068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27191316 - 27191266
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  27191316 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 27191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27841130 - 27841080
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  27841130 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 27841080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38822207 - 38822257
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38822207 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 38822257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41176993 - 41177043
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  41176993 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaagtatttga 41177043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43929279 - 43929229
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  43929279 gtcgtctttgtgcgacgttgtttgtctttcttgtttctatcaggtatttga 43929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43567008 - 43567056
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtattt 49  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  43567008 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtattt 43567056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 36508067 - 36508114
Alignment:
Q  4 gtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  36508067 gtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 36508114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7640335 - 7640285
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  7640335 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 7640285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25516627 - 25516677
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  25516627 gtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 25516677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44951554 - 44951604
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  44951554 gtcgtctttgtacgacgttgtttgtttttcttgtttctctcaggtatttga 44951604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44167690 - 44167654
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  44167690 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 44167654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 6090029 - 6090075
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||    
T  6090029 tctttgtgcgacgttgtttgtttttcttgtttctctcagatatttga 6090075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16720827 - 16720778
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||| |||||||||||||||||||||| || ||| |||||||    
T  16720827 gtcgtctttgtgtgacgttgtttgtttttcttgttactttcaggtatttg 16720778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24500622 - 24500671
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||| ||||||||||   |||||||||||    
T  24500622 gtcgtctttgtgcgacgttgtttgtctttcttgttttgttcatgtatttg 24500671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15673947 - 15673911
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15673947 gtcgtctttgtgcgacgttgtttgtctttcttgtttc 15673911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7443545 - 7443510
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7443545 gtcgtctttgtgcgacgttgtttgtctttcttgttt 7443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10589230 - 10589265
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10589230 gtcgtctttgtgcgacgttgtttgtctttcttgttt 10589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19580981 - 19580946
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  19580981 gtcgtctttgtgcgacgttgtttgttttttttgttt 19580946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4878715 - 4878683
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttg 33  Q
    ||||||||||||||||||||||||| |||||||    
T  4878715 gtcgtctttgtgcgacgttgtttgtctttcttg 4878683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37883788 - 37883824
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  37883788 gtcgtctttgtgcgatgttgtttgtctttcttgtttc 37883824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19953705 - 19953740
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    |||||||||||||| |||||||||| ||||||||||    
T  19953705 gtcgtctttgtgcggcgttgtttgtctttcttgttt 19953740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 26491438 - 26491473
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    ||||||||||| |||||||||||| |||||||||||    
T  26491438 tcgtctttgtgtgacgttgtttgtgtttcttgtttc 26491473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 40125525 - 40125560
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||||||| ||||| |||||||||||    
T  40125525 tcgtctttgtgcgacgttctttgtctttcttgtttc 40125560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 27
Target Start/End: Original strand, 3390567 - 3390593
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgttt 27  Q
    |||||||||||||||||||||||||||    
T  3390567 gtcgtctttgtgcgacgttgtttgttt 3390593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 27
Target Start/End: Original strand, 3603120 - 3603146
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgttt 27  Q
    |||||||||||||||||||||||||||    
T  3603120 gtcgtctttgtgcgacgttgtttgttt 3603146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38646719 - 38646767
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtattt 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38646719 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcatgtattt 38646767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22344891 - 22344841
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  22344891 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 22344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23257223 - 23257273
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  23257223 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 23257273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4564651 - 4564701
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  4564651 gtcgtctttgtgcgacgttgtttgtttttcttatttctctcaggtatttga 4564701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6212893 - 6212843
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  6212893 gtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 6212843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14717249 - 14717199
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  14717249 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcagatatttga 14717199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23320575 - 23320625
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  23320575 gtcgtctttgtgcgacgttatttgtctttcttgtttctctcatgtatttga 23320625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38644776 - 38644726
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  38644776 gtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 38644726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 630763 - 630713
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||| || |||||||||||| ||| ||||||||    
T  630763 gtcgtctttgtgcgacgttgttcgtctttcttgtttctctcaagtatttga 630713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5832369 - 5832419
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||| ||||||||||||||||||| |||||||||||| ||| ||||||||    
T  5832369 gtcgtatttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 5832419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12967711 - 12967661
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  12967711 gtcgtctttgtgcgacattgtttgtctttcttgtttctctcaggtatttga 12967661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21326608 - 21326658
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||| | ||| ||||||||    
T  21326608 gtcgtctttgtgcgacgttgtttgtctttcttgtttttctcaggtatttga 21326658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36621487 - 36621537
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| | ||||||||||||||||||| ||| ||||||||    
T  36621487 gtcgtctttgtgcgacatagtttgtttttcttgtttctttcaggtatttga 36621537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44562728 - 44562678
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  44562728 gtcgtctttgtgcgacattgtttgtctttcttgtttctctcaggtatttga 44562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45659149 - 45659199
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  45659149 gtcgtctttgtgcgacgttggttgtttttcttgtttctcttaggtatttga 45659199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28213183 - 28213232
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||||||| |||||||| |||||||||||| ||| |||||||    
T  28213183 gtcgtctttgtgcgacattgtttgtctttcttgtttctttcaggtatttg 28213232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33703489 - 33703440
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||| |||||||||||  ||| |||||||    
T  33703489 gtcgtctttgtgcgacgttgtttgtctttcttgtttcgttcacgtatttg 33703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1768100 - 1768135
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  1768100 gtcgtctttgtgcgacattgtttgtttttcttgttt 1768135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 27469686 - 27469651
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||||||||||||| |||||||||||    
T  27469686 tcgtctttgtgcgacgttgtttgtctttcttgtttc 27469651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32539169 - 32539134
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32539169 gtcgtctttgtgcgacgttgtttgtttttattgttt 32539134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 40992447 - 40992493
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||| |||||||||||||||| |||||||||||| ||| ||||||||    
T  40992447 tcttcgtgcgacgttgtttgtgtttcttgtttctctcaggtatttga 40992493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49651979 - 49652029
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||| ||||    
T  49651979 gtcgtctttgtacgacgttgtttgtctttcttgtttctctcaagtaattga 49652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10264844 - 10264893
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||| |||||||||||||||||| ||||  ||| |||||||    
T  10264844 gtcgtctttgtgcaacgttgtttgtttttcttttttcgttcaggtatttg 10264893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26199715 - 26199764
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||| | |||||||||||  ||| |||||||    
T  26199715 gtcgtctttgtgcgacgttgtttatctttcttgtttcgttcaggtatttg 26199764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 44513975 - 44513932
Alignment:
Q  7 tttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||    
T  44513975 tttgtgcgacgttgtttgtctttcttgtttcgttcaggtatttg 44513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 28
Target Start/End: Original strand, 52752158 - 52752185
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttt 28  Q
    ||||||||||||||||||||||||||||    
T  52752158 gtcgtctttgtgcgacgttgtttgtttt 52752185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 43; Significance: 2e-16; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12182 - 12132
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  12182 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 12132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 2e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 244771 - 244821
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  244771 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 244821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 2e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9270156 - 9270206
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9270156 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 9270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44295451 - 44295501
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  44295451 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 44295501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8054786 - 8054736
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  8054786 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 8054736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16996868 - 16996818
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16996868 gtcgtctttgtgcgacgttgtttgtttttcctgtttctctcaggtatttga 16996818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31874219 - 31874269
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  31874219 gtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 31874269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37129654 - 37129604
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  37129654 gtcgtctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 37129604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 32412926 - 32412975
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  32412926 tcgtctttgtgcgatgttgtttgtttttcttgtttctttcaggtatttga 32412975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5457206 - 5457256
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||| |||||||||||||||| |||||||||||| ||| ||||||||    
T  5457206 gtcgtcttcgtgcgacgttgtttgtctttcttgtttctctcaagtatttga 5457256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12248693 - 12248644
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||| |||||||||||  ||| |||||||    
T  12248693 gtcgtctttgtgcgacgttgtttgtctttcttgtttcattcaggtatttg 12248644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32256700 - 32256665
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32256700 gtcgtctttgtgcgacgttgtttgtctttcttgttt 32256665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 32104813 - 32104767
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||| ||||||||||| |||||||||||| ||| ||||||||    
T  32104813 tctttgtgcaacgttgtttgtctttcttgtttctctcaggtatttga 32104767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9992802 - 9992839
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttct 38  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  9992802 gtcgtctttgtgtgacattgtttgtttttcttgtttct 9992839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31713055 - 31713023
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttg 33  Q
    ||||||||||||||||||||||||| |||||||    
T  31713055 gtcgtctttgtgcgacgttgtttgtctttcttg 31713023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 34
Target Start/End: Original strand, 5328095 - 5328122
Alignment:
Q  7 tttgtgcgacgttgtttgtttttcttgt 34  Q
    ||||||||||||||||||||||||||||    
T  5328095 tttgtgcgacgttgtttgtttttcttgt 5328122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 14115804 - 14115757
Alignment:
Q  4 gtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||| |||||  ||||||||||||||||||||| ||| ||||||||    
T  14115804 gtctttttgcgaaattgtttgtttttcttgtttctctcaggtatttga 14115757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23766874 - 23766924
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgt-ttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||| |||| ||| |||  |||||||||||    
T  23766874 gtcgtctttgtgcgacgttgtttgtatttttttggttcattcatgtatttg 23766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36545760 - 36545710
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||| | |||||||||  ||||| ||| ||||||||    
T  36545760 gtcgtctttgtgcgacgttctatgtttttctattttctctcaggtatttga 36545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 2e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24470528 - 24470578
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24470528 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 24470578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24475476 - 24475526
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24475476 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 24475526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40476842 - 40476892
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  40476842 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 40476892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40775402 - 40775452
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  40775402 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 40775452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47749869 - 47749919
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  47749869 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 47749919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7986027 - 7986077
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  7986027 gtcgtctttgtgtgacgttgtttgtttttcttgtttctctcaggtatttga 7986077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8611603 - 8611553
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  8611603 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtgtttga 8611553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11001978 - 11002028
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  11001978 gtcgtctttgtgcaacgttgtttgtttttcttgtttctctcaggtatttga 11002028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26017637 - 26017587
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  26017637 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 26017587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37399733 - 37399783
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  37399733 gtcgtctttgtgcgacgttgtttgtctttcttgtttctttcaagtatttga 37399783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49167060 - 49167110
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  49167060 gtcgtctttgtgcgacgttgtttgtttttcttgtttctcccaggtatttga 49167110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30992802 - 30992752
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| ||||||| |||| ||| ||||||||    
T  30992802 gtcgtctttgtgcgacgttgtttgtctttcttggttctctcaggtatttga 30992752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 42490843 - 42490888
Alignment:
Q  6 ctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  42490843 ctttgtgcgacattgtttgtttttcttgtttctctcaggtatttga 42490888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43483735 - 43483770
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  43483735 gtcgtctttgtgcgacgttgtttgtctttcttgttt 43483770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 135124 - 135074
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||| |||||||||||||||||| ||||||||||||| | | ||||||||    
T  135124 gtcgtttttgtgcgacgttgtttgattttcttgtttctcttaggtatttga 135074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 43807125 - 43807079
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||| |||||||||||| ||| || |||||    
T  43807125 tctttgtgcgacgttgtttgtctttcttgtttctctcaggtgtttga 43807079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28015492 - 28015541
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  28015492 gtcgtctttgtgcgacgttgtttgcctttcttgtttcgttcaggtatttg 28015541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 39090227 - 39090272
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||    
T  39090227 tctttgtgcgacgttgtttgtctttcttgtttcgttcaggtatttg 39090272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8319450 - 8319500
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||| || |||||||| |||||||||||| ||| | ||||||    
T  8319450 gtcgtctttgtgcaaccttgtttgtctttcttgtttctctcaggcatttga 8319500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 19895647 - 19895613
Alignment:
Q  17 gttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||| ||| ||||||||    
T  19895647 gttgtttgtttttcttgtttctctcaggtatttga 19895613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25855199 - 25855149
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||| | |||||||||  ||||| ||| ||||||||    
T  25855199 gtcgtctttgtgcgacgttatatgtttttctattttctctcaggtatttga 25855149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 2e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4070686 - 4070736
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  4070686 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 4070736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29310333 - 29310283
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  29310333 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 29310283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35906404 - 35906454
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  35906404 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 35906454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4726907 - 4726857
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  4726907 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 4726857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6887157 - 6887107
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  6887157 gtcgtctttgtgcgacgttgtttgtttttcttgcttctctcaggtatttga 6887107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31645964 - 31646014
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  31645964 gtcgtctttgtgcgacgttgtttgttttccttgtttctctcaggtatttga 31646014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 28618738 - 28618787
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  28618738 tcgtctttgtgcgacgttatttgtttttcttgtttctctcaggtatttga 28618787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34893923 - 34893887
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34893923 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 34893887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33486548 - 33486499
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||| |||||||||||  ||| |||||||    
T  33486548 gtcgtctttgtgcgacgttgtttgtctttcttgtttcgttcaagtatttg 33486499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 18472704 - 18472656
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||||||||||||||| |||||||||||  ||| |||||||    
T  18472704 tcgtctttgtgcgacgttgtttgtctttcttgtttcattcaggtatttg 18472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10924112 - 10924063
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||| ||||||||||||||||| |||  |||||||    
T  10924112 gtcgtctttgtgcgacgttg-ttgtttttcttgtttctctcagatatttga 10924063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13007827 - 13007861
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtt 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  13007827 gtcgtctttgtgcgacgttgtttgtctttcttgtt 13007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 9034920 - 9034871
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||| |||| ||| |||||||||||| ||| ||||||||    
T  9034920 tcgtctttgtgcgacattgtctgtctttcttgtttctctcaggtatttga 9034871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19646020 - 19645983
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttct 38  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  19646020 gtcgtctttgtgtgacgttgtttgtctttcttgtttct 19645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20270849 - 20270898
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  20270849 gtcgtctttgtgcgacgttgtttgcctttcttgtttcgttcaggtatttg 20270898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41554622 - 41554671
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||| |||||||||||||||||| |||||||||||  ||| |||||||    
T  41554622 gtcgtccttgtgcgacgttgtttgtctttcttgtttcgctcaggtatttg 41554671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37425159 - 37425195
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||||||||||||||  ||||||||||    
T  37425159 gtcgtctttgtgcgacgttgtttgtcattcttgtttc 37425195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6647892 - 6647857
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    |||||||||||||| |||||||||| ||||||||||    
T  6647892 gtcgtctttgtgcggcgttgtttgtctttcttgttt 6647857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13079280 - 13079314
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtt 35  Q
    |||||||||||||||| |||||||| |||||||||    
T  13079280 gtcgtctttgtgcgacattgtttgtctttcttgtt 13079314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 2e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4634418 - 4634468
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  4634418 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 4634468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9661988 - 9662038
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9661988 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 9662038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14542491 - 14542441
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  14542491 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 14542441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9474518 - 9474468
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  9474518 gtcgtctttgtgcgacgttgtttgtttttcttgtttctcttaggtatttga 9474468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23067827 - 23067777
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  23067827 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 23067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30470102 - 30470052
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  30470102 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtgtttga 30470052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32189115 - 32189165
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  32189115 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtgtttga 32189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46716873 - 46716823
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  46716873 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 46716823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54420720 - 54420670
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  54420720 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctgaggtatttga 54420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41486710 - 41486760
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||| |||||||||||||||||||||||| |||  |||||||    
T  41486710 gtcgtctttgtgcaacgttgtttgtttttcttgtttctctcagctatttga 41486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29474307 - 29474258
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||||||||||||||| ||||||||||||  ||| |||||||    
T  29474307 gtcgtctttgtgcgacgttgtttgcttttcttgtttcgttcaggtatttg 29474258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40859809 - 40859844
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40859809 gtcgtctttgtgcgacgttgtttgtctttcttgttt 40859844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 53903716 - 53903766
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||| || |||||||||||||||||| ||||||| ||| ||||||||    
T  53903716 gtcgtcttcgtacgacgttgtttgtttttcctgtttctctcaggtatttga 53903766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14346566 - 14346615
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||| |||||||||||||||||| |||||||||||  ||| |||||||    
T  14346566 gtcgtcgttgtgcgacgttgtttgtctttcttgtttcgttcaggtatttg 14346615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15729960 - 15729911
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  15729960 gtcgtctttgtgcgacgttgtttgcctttcttgtttcgttcaggtatttg 15729911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38434734 - 38434783
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||| ||||||||||||| |||||||||||  ||| |||||||    
T  38434734 gtcgtctttgtccgacgttgtttgtctttcttgtttcgttcaggtatttg 38434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43156911 - 43156960
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||| |||||||||||||||||||| |||||||||||  ||| |||||||    
T  43156911 gtcgactttgtgcgacgttgtttgtctttcttgtttcattcaggtatttg 43156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 50003153 - 50003108
Alignment:
Q  3 cgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatt 48  Q
    ||||||||||||||| ||||||| |||||||||||| ||| |||||    
T  50003153 cgtctttgtgcgacgatgtttgtctttcttgtttctctcaggtatt 50003108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51646229 - 51646278
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||| ||||||||| |||||||||||  ||| |||||||    
T  51646229 gtcgtctttgtgcgatgttgtttgtctttcttgtttcgctcaagtatttg 51646278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 4959546 - 4959503
Alignment:
Q  7 tttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    ||||||||||||||||||| |||||||||||  || ||||||||    
T  4959546 tttgtgcgacgttgtttgtctttcttgtttcgttcctgtatttg 4959503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16992007 - 16992042
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||  ||||||||||    
T  16992007 gtcgtctttgtgcgacgttgtttgcctttcttgttt 16992042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 37869393 - 37869346
Alignment:
Q  4 gtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||| ||| |||||||||||||| | | ||||||||    
T  37869393 gtctttgtgcgacgttatttatttttcttgtttctctaaggtatttga 37869346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31601337 - 31601291
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtat 47  Q
    |||||||||||||||| |||||| | |||||||||||| ||| ||||    
T  31601337 gtcgtctttgtgcgacattgtttatctttcttgtttctctcaggtat 31601291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42972173 - 42972223
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||| ||||||||| ||| | |||||||||||| ||| ||||||||    
T  42972173 gtcgtctttatgcgacgttatttttctttcttgtttctctcaggtatttga 42972223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 2e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29182587 - 29182537
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  29182587 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaagtatttga 29182537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41882389 - 41882339
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  41882389 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 41882339  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43029818 - 43029868
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  43029818 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 43029868  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50519918 - 50519968
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  50519918 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtatttga 50519968  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3088643 - 3088595
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtattt 49  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  3088643 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggtattt 3088595  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 54240223 - 54240271
Alignment:
Q  3 cgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  54240223 cgtctttgtgcgatgttgtttgtttttcttgtttctatcaggtatttga 54240271  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1165375 - 1165325
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  1165375 gtcgtctttgtgcaacgttgtttgtttttcttgtttctctcaggtatttga 1165325  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22286730 - 22286680
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  22286730 gtcgtctttgtgcgacgttgtttgtttttcttgtttctctcaggcatttga 22286680  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28995288 - 28995238
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  28995288 gtcgtctttgtgcgacgttgtttgtttttcttgtttctcttaggtatttga 28995238  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33977904 - 33977854
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  33977904 gtcgtctttgtgcgacgttgtttgtttgtcttgtttctctcaggtatttga 33977854  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14741305 - 14741270
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  14741305 gtcgtctttgtgcgacgttgtttgtttttcttgttt 14741270  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 45664362 - 45664406
Alignment:
Q  7 tttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||    
T  45664362 tttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 45664406  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 913295 - 913260
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  913295 gtcgtctttgtgcgacgttgtttgtctttcttgttt 913260  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22844187 - 22844222
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22844187 gtcgtctttgtgcgacgttgtttgtctttcttgttt 22844222  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40797168 - 40797203
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40797168 gtcgtctttgtgcgacgttgtttgtctttcttgttt 40797203  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47914573 - 47914538
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47914573 gtcgtctttgtccgacgttgtttgtttttcttgttt 47914538  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7656494 - 7656444
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||||||||||  |||||||| |||||||||||| ||| ||||||||    
T  7656494 gtcgtctttgtgcgatattgtttgtctttcttgtttctctcaggtatttga 7656444  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 43839490 - 43839448
Alignment:
Q  7 tttgtgcgacgttgtttgtttttcttgtttctatcatgtattt 49  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  43839490 tttgtgcgacattgtttgtttttcttgtttctctcaggtattt 43839448  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39340334 - 39340383
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||||| |||||||||| |||||||||||  | |||||||||    
T  39340334 gtcgtctttgtgcggcgttgtttgtctttcttgtttcgttaatgtatttg 39340383  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 2598215 - 2598263
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttg 50  Q
    |||||||||||| ||||||||| | |||||||||||  |||||||||||    
T  2598215 tcgtctttgtgcaacgttgtttctctttcttgtttcgttcatgtatttg 2598263  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40461974 - 40461938
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttc 37  Q
    |||||||||||||| |||||||||| |||||||||||    
T  40461974 gtcgtctttgtgcggcgttgtttgtctttcttgtttc 40461938  T

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Target: chr3; HSP #22
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11846684 - 11846733
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||| ||| | |||||||||||| ||| ||||||||    
T  11846684 gtcgtctttgtgcgacgtt-tttttctttcttgtttctctcaggtatttga 11846733  T

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Target: chr3; HSP #23
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 20201033 - 20200987
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||| || |||||||||||||||||||||| |||  |||||||    
T  20201033 tctttgtgtgaggttgtttgtttttcttgtttctctcagttatttga 20200987  T

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Target: chr3; HSP #24
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 20203215 - 20203169
Alignment:
Q  5 tctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||||| || |||||||||||||||||||||| |||  |||||||    
T  20203215 tctttgtgtgaggttgtttgtttttcttgtttctctcagttatttga 20203169  T

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Target: scaffold0722 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5505 - 5455
Alignment:
Q  1 gtcgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  5505 gtcgtctttgtgcgacgttgtttgtctttcttgtttctctcaggtatttga 5455  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 11151 - 11199
Alignment:
Q  3 cgtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  11151 cgtctttatgcgacgttgtttgtttttcttgtttctctcaggtatttga 11199  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 137036 - 137002
Alignment:
Q  2 tcgtctttgtgcgacgttgtttgtttttcttgttt 36  Q
    |||||||||||||||||||||||||||||||||||    
T  137036 tcgtctttgtgcgacgttgtttgtttttcttgttt 137002  T

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Target: scaffold0665 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 1103 - 1056
Alignment:
Q  4 gtctttgtgcgacgttgtttgtttttcttgtttctatcatgtatttga 51  Q
    |||||| |||||  ||||||||||||||||||||| ||| ||||||||    
T  1103 gtctttttgcgaaattgtttgtttttcttgtttctctcaggtatttga 1056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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