View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5815-5 (Length: 165)

Name: Solexa-NF5815-5
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5815-5
Solexa-NF5815-5
[»] chr3 (1 HSPs)
chr3 (1-156)||(31742265-31742420)
[»] chr2 (3 HSPs)
chr2 (11-163)||(37436994-37437147)
chr2 (8-164)||(37445098-37445255)
chr2 (54-86)||(17568588-17568620)
[»] chr7 (4 HSPs)
chr7 (1-86)||(36363600-36363685)
chr7 (1-86)||(39931545-39931630)
chr7 (61-135)||(22819755-22819829)
chr7 (34-73)||(10070721-10070760)
[»] chr6 (2 HSPs)
chr6 (2-86)||(5041592-5041676)
chr6 (1-40)||(33185559-33185598)
[»] chr1 (1 HSPs)
chr1 (39-103)||(44966750-44966814)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 31742420 - 31742265
Alignment:
Q  1 cgttcgtggtgtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttctattgaaagtgtct 100  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31742420 cgttcgtggtgttgatgacatgctgacatcataggagcatgcaaaggttcaatcaagcatggatttaatttggcataagtaggttttattgaaagtgtct 31742321  T
Q  101 attttgttgtggagactactacgtgatagactaccaacatagtcaaatttggtgat 156  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31742320 attttgttgtggagactactacgtgatagactaccaacataatcaaatttggtgat 31742265  T

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Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 37437147 - 37436994
Alignment:
Q  11 gtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttctattgaaagtgtctattttgtt-g 109  Q
    |||| ||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||| |||||| |||| |  ||||| |||| |||||| || |    
T  37437147 gtttgtgacatgctgacatcccaggagcatgcacacgttcaatcaagcatggatttaatttgacataagcaggtccctttgaaggtgtatatttttttcg 37437048  T
Q  110 tggagactactacgtgatagactaccaacatagtcaaatttggtgatctgtggt 163  Q
    ||||| || ||||||||||||||| ||||| | |||||||||| ||| ||||||    
T  37437047 tggaggctgctacgtgatagactatcaacaaaatcaaatttggcgatatgtggt 37436994  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 37445255 - 37445098
Alignment:
Q  8 ggtgtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttctattgaaagtgtctattttgt 107  Q
    ||||||||||||||||| |||||  | |||||||||||  ||||||||| |||| |||||||||||||| || | || |  ||||| ||||| ||||| |    
T  37445255 ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatgaatttaatttggcatgagcaagtccctttgaaggtgtcaatttttt 37445156  T
Q  108 t-gtggagactactacgtgatagactaccaacatagtcaaatttggtgatctgtggtg 164  Q
    | |||||| || ||||||||||||||||||||| | |||||||||| |||||||||||    
T  37445155 tcgtggaggctgctacgtgatagactaccaacaaaatcaaatttggcgatctgtggtg 37445098  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 17568588 - 17568620
Alignment:
Q  54 caagcatggatttaatttggcataagtaggttc 86  Q
    ||||| |||||||||||||||||||||||||||    
T  17568588 caagcttggatttaatttggcataagtaggttc 17568620  T

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Target: chr7 (Bit Score: 50; Significance: 6e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36363685 - 36363600
Alignment:
Q  1 cgttcgtggtgtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttc 86  Q
    |||||||||||||||||||||| | |||||  |||||||||| || |||||  |||||||||||||||||||||||||| ||||||    
T  36363685 cgttcgtggtgtttatgacatgttgacatctcaggagcatgctcaagttcatccaagcatggatttaatttggcataagcaggttc 36363600  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39931545 - 39931630
Alignment:
Q  1 cgttcgtggtgtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttc 86  Q
    |||||||||||| ||||||||||| ||||   |||||||||| || ||||   ||||||||||||| |||||||||||| ||||||    
T  39931545 cgttcgtggtgtctatgacatgctgacatatcaggagcatgctcaagttcctccaagcatggattttatttggcataagcaggttc 39931630  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 22819755 - 22819829
Alignment:
Q  61 ggatttaatttggcataagtaggttctattgaaagtgtctattttgttgtggagactactacgtgatagactacc 135  Q
    ||||||||||||||||||  ||||||  ||||| || ||||||||   ||||||||| |||||| ||||||||||    
T  22819755 ggatttaatttggcataaacaggttcccttgaaggtatctatttttgcgtggagactcctacgtaatagactacc 22819829  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 10070760 - 10070721
Alignment:
Q  34 ggagcatgcacaggttcaatcaagcatggatttaatttgg 73  Q
    |||| ||||| |||||||| ||||||||||||||||||||    
T  10070760 ggagtatgcaaaggttcaaccaagcatggatttaatttgg 10070721  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 5041676 - 5041592
Alignment:
Q  2 gttcgtggtgtttatgacatgctaacatcataggagcatgcacaggttcaatcaagcatggatttaatttggcataagtaggttc 86  Q
    ||||||||||||||||||||| | |||||  | |||||||| || |||||  |||| ||| ||||||||||||||||| ||||||    
T  5041676 gttcgtggtgtttatgacatgttgacatctcaagagcatgctcaagttcatccaagtatgaatttaatttggcataagcaggttc 5041592  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33185598 - 33185559
Alignment:
Q  1 cgttcgtggtgtttatgacatgctaacatcataggagcat 40  Q
    ||||| |||||||||||||||| | |||||||||||||||    
T  33185598 cgttcatggtgtttatgacatgttgacatcataggagcat 33185559  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 44966750 - 44966814
Alignment:
Q  39 atgcacaggttcaatcaagcatggatttaatttggcataagtaggttctattgaaagtgtctatt 103  Q
    ||||||| ||||||  ||||||  ||||||||| ||||||| ||||||  |||||||||||||||    
T  44966750 atgcacatgttcaactaagcatatatttaatttagcataagcaggttcctttgaaagtgtctatt 44966814  T

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