View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5815-6 (Length: 146)
Name: Solexa-NF5815-6
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5815-6 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 6e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 14193515 - 14193647
Alignment:
| Q |
4 |
ttcgtgctggtggttgtggtgctttggattttgcttgtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacggttgtttt |
103 |
Q |
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| T |
14193515 |
ttcgtgttggtggttgtggtgctttggattttgcttgtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacgggtgtttt |
14193614 |
T |
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| Q |
104 |
gtgggtggtgattcatttgggaggttacctttg |
136 |
Q |
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| T |
14193615 |
gtgggaggtgattcatttgggaggttgcctttg |
14193647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 25647264 - 25647392
Alignment:
| Q |
8 |
tgctggtggttgtggtgctttggattttgcttgtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacggttgttttgtgg |
107 |
Q |
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| T |
25647264 |
tgctggtggccgtggtgctttggattttgcttgtttgtggatgggagctatataaaggggtggttggttttgtttaggtgaggaggcgggtgttttgtgg |
25647363 |
T |
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| Q |
108 |
gtggtgattcatttgggaggttacctttg |
136 |
Q |
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| T |
25647364 |
gtggtgattcatttgggaggttgcctttg |
25647392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 65; Significance: 6e-29; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 36314 - 36406
Alignment:
| Q |
37 |
cttgtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacggttgttttgtgggtggtgattcatttgggaggtt |
129 |
Q |
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| T |
36314 |
cttgtttatggacgggagctatataagggggtggttggttttgtttaggtgaggaggcaggtgttttgtgggtggtgatttctttgggaggtt |
36406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 36266 - 36306
Alignment:
| Q |
4 |
ttcgtgctggtggttgtggtgctttggattttgcttgtttg |
44 |
Q |
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| T |
36266 |
ttcgtgccggtggtcgtggtgcttcggattttgcttgtttg |
36306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 13954698 - 13954636
Alignment:
| Q |
40 |
gtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacggttgttt |
102 |
Q |
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| T |
13954698 |
gtttgtggacgggagctatattacggggtggctagtgttgtttaggtgaggagacgggtgttt |
13954636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 38639876 - 38639824
Alignment:
| Q |
40 |
gtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggag |
92 |
Q |
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| T |
38639876 |
gtttgtggacgagagctttataagggggtggttggtgttgtttaggtgaggag |
38639824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 15821845 - 15821783
Alignment:
| Q |
40 |
gtttgtggacgggagctatataaaggggtggttggttttgtttaggtgaggagacggttgttt |
102 |
Q |
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| T |
15821845 |
gtttgcggacgggagctatataagggagtggctgatgttgtttaggtgaggaggcgggtgttt |
15821783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 3477975 - 3478018
Alignment:
| Q |
47 |
gacgggagctatataaaggggtggttggttttgtttaggtgagg |
90 |
Q |
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| T |
3477975 |
gacgggagctatttaatggggtggctggtgttgtttaggtgagg |
3478018 |
T |
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