View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5815-7 (Length: 145)
Name: Solexa-NF5815-7
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5815-7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 105; Significance: 8e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 34370997 - 34370869
Alignment:
| Q |
12 |
gacatttgcaaccccttcaatacgggcaccgtcgacatctataaataaaagggcattcaacctccgccttccaaacataataccatgaaagaatttagaa |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
34370997 |
gacatttgcaaccccttcaacacgggcaccgtcgacatctataaataaaagggcattcgacctccgccttgcagacataataccatgaaagaatttagaa |
34370898 |
T |
|
| Q |
112 |
cttgcatccccttcacggagctagttaag |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
34370897 |
tttgcatccccttcacggagccagttaag |
34370869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 17979592 - 17979464
Alignment:
| Q |
15 |
atttgcaaccccttcaatacgggcaccgtcgacatctataaataaaagggcattcaacctccgccttccaaacataataccatgaaagaatttagaactt |
114 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| |||||||||||||| |||||| ||| |||||| || ||||||||||||||||||||||||| || |
|
|
| T |
17979592 |
atttgtaaccccttcaaatcgggttccgtcgacctctataaataaaagagcattcccccttcgccttgcagacataataccatgaaagaatttagagttt |
17979493 |
T |
|
| Q |
115 |
gcatccccttcacggagctagttaagcct |
143 |
Q |
| |
|
||||| |||| |||||| |||||||||| |
|
|
| T |
17979492 |
gcatcatcttcgcggagccagttaagcct |
17979464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 14491812 - 14491946
Alignment:
| Q |
11 |
agacatttgcaaccccttcaatacgggcaccgtcgacatctataaataaaagggcattcaacctccgccttccaaacataataccatgaaagaatttaga |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
14491812 |
agacatttgcaaccccttcaactcgggcaccgttgacatctataaataaaagggcattcgacctccgccttgcagtcataataccatgaaagaatttaga |
14491911 |
T |
|
| Q |
111 |
acttgcatccccttcacggagctagttaagccttg |
145 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| |
|
|
| T |
14491912 |
atttgcatccccttcacggagccagttaagccttg |
14491946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 27439666 - 27439540
Alignment:
| Q |
19 |
gcaaccccttcaatacgggcaccgtcgacatctataaataaaagggcattcaacctccgccttccaaacataataccatgaaagaatttagaacttgcat |
118 |
Q |
| |
|
||||||||||||| || | ||||||||||| ||||||||||| |||||| ||| |||||| | || |||||||||||||||||||||| |||||| |
|
|
| T |
27439666 |
gcaaccccttcaactcgaaccccgtcgacatcaataaataaaagagcattcgccctacgccttgctgccaaaataccatgaaagaatttagaatttgcat |
27439567 |
T |
|
| Q |
119 |
ccccttcacggagctagttaagccttg |
145 |
Q |
| |
|
| |||||||| ||| |||||||||||| |
|
|
| T |
27439566 |
caccttcacgaagccagttaagccttg |
27439540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University