View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-1 (Length: 275)
Name: Solexa-NF5817-1
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-1 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 34644791 - 34644995
Alignment:
| Q |
11 |
gaggaaaggaattgataactaaactcaaatcgccaaagaaatatgacaggtgttgtggagcagcagagaaacaaagcaaaaggggaagaaaatgaaaatt |
110 |
Q |
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| T |
34644791 |
gaggaaaggaattgataactaaactcaaatcgccaaagaaatatgacaggtgtgaaaatgcaacagagaaacaaagccaaaggggaagaaaatgaaaatt |
34644890 |
T |
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| Q |
111 |
ggaagaaaggacagtaaaattgcaagaactacnnnnnnnnntgcaagatgcaattattttacgaggactcaaaacaaaatttgataatttacaaggatca |
210 |
Q |
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| T |
34644891 |
ggaaggaaggacagtaaaattgcaagaactacaaaaaaaaatgcaagatgcaattattttacgaggactcaaaacaaaatttgataatttacaaggatca |
34644990 |
T |
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| Q |
211 |
aaaac |
215 |
Q |
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||||| |
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| T |
34644991 |
aaaac |
34644995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 34664324 - 34664409
Alignment:
| Q |
190 |
tttgataatttacaaggatcaaaaacttatttaactctatgttttcaaaattggatttgcgtatgttttcgtcctcaaacaaatat |
275 |
Q |
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| T |
34664324 |
tttgataatttacaaggaccaagaacttatttaaatctatgttttcaaaattggatttacgtatgttttcgtcctcaaacaaatat |
34664409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 23439488 - 23439434
Alignment:
| Q |
175 |
ggactcaaaacaaaatttgata-atttacaaggatcaaaaacttatttaactcta |
228 |
Q |
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| T |
23439488 |
ggactaaaaacaaaatttattacatttacaaggatcaaaaacttatttaactcta |
23439434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 11692566 - 11692626
Alignment:
| Q |
167 |
ttttacgaggactcaaaacaaaatttgataatttacaaggatcaaaaacttatttaactct |
227 |
Q |
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||||||||||||| ||||||||||||| || ||| | |||||||||||||||||||||| |
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| T |
11692566 |
ttttacgaggactaaaaacaaaatttgttatattatagagatcaaaaacttatttaactct |
11692626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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