View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-10 (Length: 193)
Name: Solexa-NF5817-10
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28791319 - 28791127
Alignment:
| Q |
1 |
atcacatctactcttggaggcaggcttacgtctatgcacatcatggtcatatcttttctcttatattcatctgcccgtttatattttcatatttatgacc |
100 |
Q |
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| T |
28791319 |
atcacatctactcttggaggcaggcttacgtctatgcacatcatggtcatatcttttctcttatattcatctgcccatttatattttcatatttatgacc |
28791220 |
T |
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| Q |
101 |
attttattatgtatcaaacttatcctatgcataagcatcatactgaagttaatggcatatatgttcttctaactgcatttctgtaatataaca |
193 |
Q |
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| T |
28791219 |
attttattatgtatcaaacttatcctatgcataagcatcatactgaagttaatgtcatatatgttctgccaactgcatttctgtaatataaca |
28791127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28784330 - 28784259
Alignment:
| Q |
1 |
atcacatctactcttggaggcaggcttacgtctatgcacatcatggtcatatcttttctcttatattcatct |
72 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||| ||||||||| |
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| T |
28784330 |
atcacatctactcttggaggcaggcttacatctatgctcatcatggtcatctcttctctcttttattcatct |
28784259 |
T |
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