View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-19 (Length: 143)
Name: Solexa-NF5817-19
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-19 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 4e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 38380875 - 38380739
Alignment:
| Q |
7 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgccat |
106 |
Q |
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| T |
38380875 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgctat |
38380776 |
T |
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| Q |
107 |
tggtgattttcttgtttcacctgatcttaatagtagt |
143 |
Q |
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| T |
38380775 |
tggtgattttcttgcttcacctgatcttaatagtagt |
38380739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 38398504 - 38398368
Alignment:
| Q |
7 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgccat |
106 |
Q |
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| T |
38398504 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaactcggtgctat |
38398405 |
T |
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| Q |
107 |
tggtgattttcttgtttcacctgatcttaatagtagt |
143 |
Q |
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| T |
38398404 |
tggtgattttcttgtttcacctgatcttaatagtagt |
38398368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 38389741 - 38389607
Alignment:
| Q |
7 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgccat |
106 |
Q |
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| T |
38389741 |
acgaacatgatttctttatagttgggagaagacatgaaactcaatatcctcaaaccgatggattagcagaatggagtgaatttccagaacttggtgctat |
38389642 |
T |
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| Q |
107 |
tggtgattttcttgtttcacctgatcttaatagta |
141 |
Q |
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| T |
38389641 |
tggtgattttcttgcttcacctgatcttaatagta |
38389607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 5e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 37841386 - 37841520
Alignment:
| Q |
9 |
gaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgccattg |
108 |
Q |
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| T |
37841386 |
gaacatgatttttttatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattg |
37841485 |
T |
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| Q |
109 |
gtgattttcttgtttcacctgatcttaatagtagt |
143 |
Q |
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| T |
37841486 |
gtgattttcttgcttcacccgatcttaatagtagt |
37841520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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