View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5817-2 (Length: 265)

Name: Solexa-NF5817-2

Description: NF5817

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] Solexa-NF5817-2

[»] chr5 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 153; E-Value: 4e-81

Query Start/End: Original strand, 1 - 261

Target Start/End: Original strand, 38397891 - 38398148

Alignment:

Q	1	catgtgtggccaattagcgacgtccatgagtttgtgcaggcaaagagttggtcgtagatgatgnnnnnnnnnnnnnnnnnnnnnggaagatgacagtcac	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38397891	catgtgtggccaattagcgacgccgaagagtttgtgcaggcaaagagttggtcgtagatgatgaaaaaaataatacaaaaa---ggaagatgacagtcac	38397987	T

Q	101	gagagacgatcggaggttattctggtaataatacaatttttatcggagactgtttggtctttaacggaaagttaataaaaataactaatgtgtattttat	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38397988	gagagacgatcggaggttattttcgtaataatacaatttttaacggagactatttggtctttaatggaaagttaataaaaataactaatgtgtattttat	38398087	T

Q	201	ttaaaagttaagggaggggagtgtgtgttttaaaacgatgagggaggggagtgtaatatct	261	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38398088	ttaaaagttaaggtaggggagtgtgtgttttaaaacaatgagggaggggagtgtaatatct	38398148	T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 208 - 258

Target Start/End: Complemental strand, 33299040 - 33298990

Alignment:

Q	208	ttaagggaggggagtgtgtgttttaaaacgatgagggaggggagtgtaata	258	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33299040	ttaagggaggggagtgtgtgttttacaacaagaggggaggggagtgtaata	33298990	T

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