View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5817-22 (Length: 140)
Name: Solexa-NF5817-22
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-22 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 132; Significance: 6e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34644527 - 34644665
Alignment:
| Q |
1 |
agagaaaatcacgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaagagctttatctaccactatatctagttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34644527 |
agagaaaatcacgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaagagctttatctaccactatatctagttg-a |
34644625 |
T |
|
| Q |
101 |
aactaacatgattgcattagcttgtaactaacttataaca |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34644626 |
aactaacatgattgcattagcttgtaactaacttataaca |
34644665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 34636495 - 34636556
Alignment:
| Q |
11 |
acgacaaaacaactatcatttcattgaaaactgaagaactgagttatacaatgtacaaaaga |
72 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| | | |||||||||| |||||||||||| |
|
|
| T |
34636495 |
acgagaaaacaactatcatttatttgaaaattgaggcattgagttatacgatgtacaaaaga |
34636556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University