View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-28 (Length: 115)
Name: Solexa-NF5817-28
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 40444007 - 40444114
Alignment:
| Q |
8 |
attcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagctaataatagaaaaatacaaaacat |
107 |
Q |
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| T |
40444007 |
attcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagctaataatagaaaaatacaaaacat |
40444106 |
T |
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| Q |
108 |
taatcagt |
115 |
Q |
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|||||||| |
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| T |
40444107 |
taatcagt |
40444114 |
T |
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Target: chr7 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 1517522 - 1517446
Alignment:
| Q |
8 |
attcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagct |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||| |||||||||||| |
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| T |
1517522 |
attcttagcattcttgtatatgaggtataagatcatttgagagacaccaaatagaaatcctaacacatttggcagct |
1517446 |
T |
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