View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5817-3 (Length: 264)
Name: Solexa-NF5817-3
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 26720093 - 26720157
Alignment:
| Q |
8 |
aataggacttgatacttgatagtactctgctacaacactttattgagacaatatatatgttgtta |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720093 |
aataggacttgatacttgatagtactctgctacaacactttattgagacaatatatatgttgtta |
26720157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 1754737 - 1754675
Alignment:
| Q |
191 |
ctataggagaatagaagatcaactaatccaaggtacatcgtcccatttaatttatcctcctat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1754737 |
ctataggagaatagaagatcaactaatccaaggtacatcgtcccatttaatttatcctcctat |
1754675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 26720203 - 26720253
Alignment:
| Q |
133 |
tcaccgaggacttttgcttgaaaatagtgac-aaatgctactttacctatg |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26720203 |
tcaccgaggacttttgcttgaaaatagtgacaaaatgctactttacctatg |
26720253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University