View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5817-30 (Length: 109)

Name: Solexa-NF5817-30
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5817-30
Solexa-NF5817-30
[»] chr5 (11 HSPs)
chr5 (10-106)||(30241153-30241249)
chr5 (23-108)||(29854544-29854629)
chr5 (23-108)||(29873407-29873492)
chr5 (19-109)||(30337309-30337399)
chr5 (23-109)||(30484633-30484719)
chr5 (23-109)||(30061604-30061690)
chr5 (23-109)||(30712216-30712302)
chr5 (23-109)||(30750878-30750964)
chr5 (21-102)||(30437052-30437133)
chr5 (23-109)||(30676076-30676162)
chr5 (23-108)||(30401310-30401395)
[»] chr4 (1 HSPs)
chr4 (23-109)||(20295370-20295456)
[»] chr7 (1 HSPs)
chr7 (12-109)||(26708564-26708661)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 2e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 30241153 - 30241249
Alignment:
Q  10 taacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  30241153 taacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaagttttttct 30241249  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 29854629 - 29854544
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctac 108  Q
    |||||||||||||||||| ||||||||| |||||||||   |||  |||||||||||||||||||| ||||| |||||||||||||    
T  29854629 gtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctac 29854544  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 29873492 - 29873407
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctac 108  Q
    |||||||| ||||||||| ||||||||| |||||||||   |||| |||||||||||||||||||| ||||| |||||||||||||    
T  29873492 gtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctac 29873407  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 30337309 - 30337399
Alignment:
Q  19 tcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    |||||||||||||||||||||||||||||||| |||||||||   ||||||| ||| ||||||||||  | ||||| ||||||| ||||||    
T  30337309 tcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagataatattgctgaacgtaagaacaagttttctctaca 30337399  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 30484719 - 30484633
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    ||||||||||||||| |||||||||||| |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  30484719 gtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttttctctaca 30484633  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 30061690 - 30061604
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  30061690 gtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctaca 30061604  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 30712216 - 30712302
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  30712216 gtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctaca 30712302  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 30750964 - 30750878
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  30750964 gtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctaca 30750878  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 30437133 - 30437052
Alignment:
Q  21 aagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagtttt 102  Q
    |||||||||||| ||||||||||||||||| |||||||||   |||||||||||  |||||||||  | ||||| |||||||    
T  30437133 aagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagtttt 30437052  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 30676076 - 30676162
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    |||||||  ||||||||| ||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  30676076 gtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctaca 30676162  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 30401395 - 30401310
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctac 108  Q
    |||||||| | ||||||| ||||||||| |||||||||   | || |||||||||||||||||||  ||||| || ||| ||||||    
T  30401395 gtttcgccgtcagatcggcaacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaaatttcttctac 30401310  T

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Target: chr4 (Bit Score: 43; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 20295370 - 20295456
Alignment:
Q  23 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    |||||||||||||||||||| ||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| ||||||    
T  20295370 gtttcgccatgagatcggtagcaggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctaca 20295456  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 26708661 - 26708564
Alignment:
Q  12 acctctctcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctaca 109  Q
    |||||| | |||||||||||| ||||||||||||||||| |||||||||   |||||||||||  |||||||||  | ||||| ||||||| ||||||    
T  26708661 acctctttaaagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctaca 26708564  T

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