View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5817-32 (Length: 102)

Name: Solexa-NF5817-32
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5817-32
Solexa-NF5817-32
[»] chr8 (11 HSPs)
chr8 (19-64)||(40621705-40621750)
chr8 (21-64)||(16325024-16325067)
chr8 (19-64)||(6911207-6911252)
chr8 (19-60)||(22781231-22781272)
chr8 (19-64)||(14999249-14999294)
chr8 (19-60)||(41403937-41403978)
chr8 (19-64)||(41722005-41722050)
chr8 (31-64)||(16324922-16324955)
chr8 (19-64)||(43801649-43801694)
chr8 (19-50)||(8489551-8489582)
chr8 (36-63)||(41721906-41721933)
[»] chr5 (8 HSPs)
chr5 (19-64)||(42546427-42546472)
chr5 (19-63)||(39634882-39634926)
chr5 (19-64)||(32346975-32347020)
chr5 (25-60)||(14076853-14076888)
chr5 (31-64)||(17370145-17370178)
chr5 (19-64)||(31194043-31194088)
chr5 (27-64)||(36955480-36955517)
chr5 (31-63)||(42546539-42546571)
[»] chr4 (11 HSPs)
chr4 (19-64)||(9551302-9551347)
chr4 (19-63)||(19037801-19037845)
chr4 (19-64)||(5465931-5465976)
chr4 (19-64)||(46993247-46993292)
chr4 (19-59)||(11789942-11789982)
chr4 (19-64)||(21785786-21785831)
chr4 (19-64)||(24673899-24673944)
chr4 (19-63)||(23655245-23655289)
chr4 (31-64)||(11790052-11790085)
chr4 (19-64)||(26297491-26297536)
chr4 (19-62)||(1024986-1025029)
[»] chr3 (13 HSPs)
chr3 (19-64)||(29828859-29828904)
chr3 (19-64)||(46883590-46883635)
chr3 (20-64)||(4041362-4041406)
chr3 (19-60)||(8799494-8799535)
chr3 (19-64)||(53197066-53197111)
chr3 (19-63)||(25349888-25349932)
chr3 (19-63)||(38499897-38499941)
chr3 (31-64)||(4041261-4041294)
chr3 (19-64)||(43797530-43797575)
chr3 (19-64)||(43797721-43797766)
chr3 (31-64)||(46883493-46883526)
chr3 (19-64)||(48346072-48346117)
chr3 (36-64)||(20383230-20383258)
[»] chr1 (17 HSPs)
chr1 (19-64)||(13947000-13947045)
chr1 (19-64)||(37948866-37948911)
chr1 (19-63)||(33156633-33156677)
chr1 (19-64)||(3385489-3385534)
chr1 (19-64)||(27171877-27171922)
chr1 (19-60)||(42082895-42082936)
chr1 (19-64)||(43297029-43297074)
chr1 (19-58)||(39781148-39781187)
chr1 (19-64)||(24883147-24883191)
chr1 (19-64)||(34970163-34970208)
chr1 (19-60)||(33401035-33401076)
chr1 (31-64)||(34970063-34970096)
chr1 (31-64)||(38338745-38338778)
chr1 (19-64)||(38338845-38338890)
chr1 (31-64)||(49777013-49777046)
chr1 (36-64)||(5771986-5772014)
chr1 (31-63)||(39781253-39781285)
[»] chr7 (10 HSPs)
chr7 (23-64)||(6408436-6408477)
chr7 (19-64)||(26903506-26903551)
chr7 (19-64)||(19318325-19318371)
chr7 (19-60)||(35207356-35207397)
chr7 (19-60)||(48006302-48006343)
chr7 (31-64)||(35207256-35207289)
chr7 (19-60)||(35363400-35363441)
chr7 (31-64)||(48006202-48006235)
chr7 (23-59)||(25048205-25048241)
chr7 (36-64)||(26903623-26903651)
[»] chr2 (13 HSPs)
chr2 (19-64)||(157025-157070)
chr2 (19-64)||(21265740-21265785)
chr2 (19-60)||(22563292-22563333)
chr2 (19-64)||(13979710-13979755)
chr2 (19-64)||(34645624-34645669)
chr2 (25-63)||(4682827-4682865)
chr2 (19-64)||(8237922-8237966)
chr2 (31-64)||(12232640-12232673)
chr2 (19-64)||(12232740-12232785)
chr2 (31-64)||(21265640-21265673)
chr2 (31-64)||(22563400-22563433)
chr2 (31-64)||(29892989-29893022)
chr2 (31-64)||(34645736-34645769)
[»] chr6 (3 HSPs)
chr6 (19-60)||(16125604-16125645)
chr6 (19-59)||(22748766-22748806)
chr6 (36-63)||(24565297-24565324)


Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40621705 - 40621750
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  40621705 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 40621750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 16325024 - 16325067
Alignment:
Q  21 aaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  16325024 aaacaaatatttgttttttaatttaaaatctcaaccgttagata 16325067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6911207 - 6911252
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  6911207 ttaaacaaatatttgttttttaatttaaaatctcaaccgttggata 6911252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 22781231 - 22781272
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  22781231 ttaaacaaatatttgttttttaatttaaaatctcaaccgtta 22781272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 14999294 - 14999249
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||    
T  14999294 ttaaacaaatatttgttttttaatttaaaatctcaactattagata 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41403937 - 41403978
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  41403937 ttaaacaaatatttgtttttaaatttaaaatctcaaccgtta 41403978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 41722005 - 41722050
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||    
T  41722005 ttaaacaaatatttgtttttttatttaaaatcttaaccgttagata 41722050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 16324955 - 16324922
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  16324955 ttgttttttaatttaaaatctcaaccgttagata 16324922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 43801649 - 43801694
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||||||||||| || |||||||||||||| ||||| ||||||||    
T  43801649 ttaaacaaatattagttttttaatttaaaatttcaactgttagata 43801694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 8489551 - 8489582
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatc 50  Q
    |||||||||||||||| |||||||||||||||    
T  8489551 ttaaacaaatatttgttttttaatttaaaatc 8489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 63
Target Start/End: Complemental strand, 41721933 - 41721906
Alignment:
Q  36 ttttaatttaaaatctcaaccgttagat 63  Q
    ||||||||||||||||||||||||||||    
T  41721933 ttttaatttaaaatctcaaccgttagat 41721906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 42546472 - 42546427
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  42546472 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 42546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 39634926 - 39634882
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  39634926 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagat 39634882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 32347020 - 32346975
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  32347020 ttaaacaaatatttgttttttaatttaaaatctcaaccgtaagata 32346975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 14076853 - 14076888
Alignment:
Q  25 aaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||| |||||||||||||||||||||||||    
T  14076853 aaatatttgttttttaatttaaaatctcaaccgtta 14076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 17370178 - 17370145
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  17370178 ttgttttttaatttaaaatctcaaccgttagata 17370145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 31194088 - 31194043
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||||||||||||   |||||||||||||||||||||||| ||||    
T  31194088 ttaaacaaatatttagtttttaatttaaaatctcaaccgttggata 31194043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 36955480 - 36955517
Alignment:
Q  27 atatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  36955480 atatttgttttttaatttaaaatcgcaaccgttagata 36955517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 42546539 - 42546571
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||| ||||||||||||||||||||||||||||    
T  42546539 ttgttttttaatttaaaatctcaaccgttagat 42546571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9551347 - 9551302
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  9551347 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 9551302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19037845 - 19037801
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  19037845 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagat 19037801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 5465976 - 5465931
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  5465976 ttaaataaatatttgttttttaatttaaaatctcaaccgttagata 5465931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 46993247 - 46993292
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  46993247 ttaaacaaatatttgttttttaatttaaaatctcaatcgttagata 46993292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 11789982 - 11789942
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtt 59  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  11789982 ttaaacaaatatttgttttttaatttaaaatctcaaccgtt 11789942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 21785831 - 21785786
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||    
T  21785831 ttaaacaaatatttattttttaatttaaaatctcaactgttagata 21785786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 24673899 - 24673944
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||    
T  24673899 ttaaataaatatttgttttttaatttaaaatctcaatcgttagata 24673944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 23655245 - 23655289
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||||  |||||||||||||| |||||||||||||    
T  23655245 ttaaacaaatatttgatttttaatttaaaatttcaaccgttagat 23655289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 11790052 - 11790085
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  11790052 ttgttttttaatttaaaatctcaaccgttagata 11790085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 26297491 - 26297536
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||| ||||||| | |||||||||||||||||||| ||||||||    
T  26297491 ttaaacgaatatttattttttaatttaaaatctcaactgttagata 26297536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 1025029 - 1024986
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttaga 62  Q
    |||||||||||||  | |||||||||||||| ||||||||||||    
T  1025029 ttaaacaaatattaattttttaatttaaaatatcaaccgttaga 1024986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 29828859 - 29828904
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  29828859 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 29828904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 46883590 - 46883635
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  46883590 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 46883635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4041362 - 4041406
Alignment:
Q  20 taaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  4041362 taaacaaatatttgttttttaatttaaaatctcaaccgttagata 4041406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8799494 - 8799535
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  8799494 ttaaacaaatatttgttttttaatttaaaatctcaaccgtta 8799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 53197111 - 53197066
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  53197111 ttaaataaatatttgttttttaatttaaaatctcaaccgttagata 53197066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25349888 - 25349932
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  25349888 ttaaacaaatatttattttttaatttaaaatctcaaccgttagat 25349932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 38499941 - 38499897
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||    
T  38499941 ttaaacaaatatttggtttttagtttaaaatctcaaccgttagat 38499897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 4041294 - 4041261
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  4041294 ttgttttttaatttaaaatctcaaccgttagata 4041261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 43797530 - 43797575
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||    
T  43797530 ttaaacaaatatttggtttttaatttaaaatcttaaccgttggata 43797575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43797766 - 43797721
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||| |||||| |||||||    
T  43797766 ttaaacaaatatttattttttaatttaaaatttcaaccattagata 43797721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 46883526 - 46883493
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  46883526 ttgttttttaatttaaaatctcaaccgttagata 46883493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 48346117 - 48346072
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||| ||||||||||| ||||||||||||    
T  48346117 ttaaacaaatatttatttttttatttaaaatctaaaccgttagata 48346072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 20383230 - 20383258
Alignment:
Q  36 ttttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||||||||||||||||    
T  20383230 ttttaatttaaaatctcaaccgttagata 20383258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 13947045 - 13947000
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  13947045 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 13947000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37948911 - 37948866
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  37948911 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagata 37948866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33156633 - 33156677
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  33156633 ttaaacaaatatttgttttttaatttaaaatctcaaccgttagat 33156677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3385489 - 3385534
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  3385489 ttaaacaaatatttattttttaatttaaaatctcaaccgttagata 3385534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 27171922 - 27171877
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  27171922 ttaaacaaatatttgttttttaatttaaaatctcgaccgttagata 27171877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 42082936 - 42082895
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  42082936 ttaaacaaatatttgttttttaatttaaaatctcaaccgtta 42082895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 43297029 - 43297074
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  43297029 ttaaataaatatttgttttttaatttaaaatctcaaccgttagata 43297074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 39781187 - 39781148
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgt 58  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39781187 ttaaacaaatatttgttttttaatttaaaatctcaaccgt 39781148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 24883147 - 24883191
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  24883147 ttaaacaaatattttt-ttttaatttaaaatctcaaccgttagata 24883191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34970163 - 34970208
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||    
T  34970163 ttaaacaaatatttattttttaatttaaaatcttaaccgttagata 34970208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33401035 - 33401076
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||| | |||||||||||||||| ||||||||    
T  33401035 ttaaacaaatatttattttttaatttaaaatcttaaccgtta 33401076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 34970096 - 34970063
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  34970096 ttgttttttaatttaaaatctcaaccgttagata 34970063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 38338778 - 38338745
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  38338778 ttgttttttaatttaaaatctcaaccgttagata 38338745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38338845 - 38338890
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | |||||||||||||| ||||| ||||||||    
T  38338845 ttaaacaaatatttattttttaatttaaaatttcaactgttagata 38338890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 49777013 - 49777046
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  49777013 ttgttttttaatttaaaatctcaaccgttagata 49777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 5772014 - 5771986
Alignment:
Q  36 ttttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||||||||||||||||    
T  5772014 ttttaatttaaaatctcaaccgttagata 5771986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 39781253 - 39781285
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagat 63  Q
    |||| ||||||||||||||||||||||||||||    
T  39781253 ttgttttttaatttaaaatctcaaccgttagat 39781285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 6408436 - 6408477
Alignment:
Q  23 acaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6408436 acaaatatttgttttttaatttaaaatctcaaccgttagata 6408477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26903551 - 26903506
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  26903551 ttaaacaaatatttgttttttaatttaaaatctcaaccgttcgata 26903506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19318325 - 19318371
Alignment:
Q  19 ttaaacaaatatttgtatt-ttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| || |||||||||||||||||||||||||||    
T  19318325 ttaaacaaatatttgttttcttaatttaaaatctcaaccgttagata 19318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 35207356 - 35207397
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  35207356 ttaaacaaatatttgttttttaatttaaaatctcgaccgtta 35207397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48006302 - 48006343
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  48006302 ttaaacaaatatttattttttaatttaaaatctcaaccgtta 48006343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 35207289 - 35207256
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  35207289 ttgttttttaatttaaaatctcaaccgttagata 35207256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 35363441 - 35363400
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    ||||||||||| || | |||||||||||||||||||||||||    
T  35363441 ttaaacaaatacttattttttaatttaaaatctcaaccgtta 35363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 48006235 - 48006202
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  48006235 ttgttttttaatttaaaatctcaaccgttagata 48006202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 25048205 - 25048241
Alignment:
Q  23 acaaatatttgtattttaatttaaaatctcaaccgtt 59  Q
    |||||||||| | ||||||||||||||||||||||||    
T  25048205 acaaatatttattttttaatttaaaatctcaaccgtt 25048241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 26903623 - 26903651
Alignment:
Q  36 ttttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||||||||||||||||    
T  26903623 ttttaatttaaaatctcaaccgttagata 26903651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 157070 - 157025
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  157070 ttaaacaaatatttgttttttaatttcaaatctcaaccgttagata 157025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21265740 - 21265785
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||    
T  21265740 ttaaacaaatatttgttttttaatttaaaatctcaaccattagata 21265785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 22563333 - 22563292
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  22563333 ttaaacaaatatttgttttttaatttaaaatctcaaccgtta 22563292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 13979755 - 13979710
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||    
T  13979755 ttaaacaaatatttattttttaatttaaaatctcaatcgttagata 13979710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 34645669 - 34645624
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||    
T  34645669 ttaaataaatatttgttttttaatttaaaatctcaatcgttagata 34645624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 4682827 - 4682865
Alignment:
Q  25 aaatatttgtattttaatttaaaatctcaaccgttagat 63  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  4682827 aaataattgtattttaatttaaaatttcaaccgttagat 4682865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8237966 - 8237922
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||    
T  8237966 ttaaacaaatatttgt-ttttaatttaaaatctcaactattagata 8237922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 12232673 - 12232640
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  12232673 ttgttttttaatttaaaatctcaaccgttagata 12232640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 12232740 - 12232785
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||||||||||||||| ||||||||||| |||||| | ||||||||    
T  12232740 ttaaacaaatatttgttttttaatttaatatctcacctgttagata 12232785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 21265673 - 21265640
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  21265673 ttgttttttaatttaaaatctcaaccgttagata 21265640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 22563400 - 22563433
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  22563400 ttgttttttaatttaaaatctcaaccgttagata 22563433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 29892989 - 29893022
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  29892989 ttgttttttaatttaaaatctcaaccgttagata 29893022  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 34645736 - 34645769
Alignment:
Q  31 ttgtattttaatttaaaatctcaaccgttagata 64  Q
    |||| |||||||||||||||||||||||||||||    
T  34645736 ttgttttttaatttaaaatctcaaccgttagata 34645769  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 16125645 - 16125604
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtta 60  Q
    |||||||||||||||| |||||||||||||| |||| |||||    
T  16125645 ttaaacaaatatttgttttttaatttaaaatttcaatcgtta 16125604  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22748766 - 22748806
Alignment:
Q  19 ttaaacaaatatttgtattttaatttaaaatctcaaccgtt 59  Q
    |||||||||||||||  |||||||||||||||| |||||||    
T  22748766 ttaaacaaatatttgatttttaatttaaaatcttaaccgtt 22748806  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 63
Target Start/End: Original strand, 24565297 - 24565324
Alignment:
Q  36 ttttaatttaaaatctcaaccgttagat 63  Q
    ||||||||||||||||||||||||||||    
T  24565297 ttttaatttaaaatctcaaccgttagat 24565324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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