View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-34 (Length: 95)
Name: Solexa-NF5817-34
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-34 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 24628908 - 24628822
Alignment:
| Q |
8 |
gaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattagaatggttaagaagttcatctc |
94 |
Q |
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| T |
24628908 |
gaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattggaatggttaagaagttcatctc |
24628822 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 4534950 - 4534878
Alignment:
| Q |
8 |
gaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattagaatggtt |
80 |
Q |
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| T |
4534950 |
gaatgagcatgaggataacggcagcatcacggaatccatttttgggaagaagagagaaagcattggaatggtt |
4534878 |
T |
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