View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5817-35 (Length: 92)

Name: Solexa-NF5817-35
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5817-35
Solexa-NF5817-35
[»] chr5 (13 HSPs)
chr5 (1-92)||(30241430-30241521)
chr5 (1-91)||(30207488-30207578)
chr5 (6-91)||(29854282-29854367)
chr5 (8-92)||(17417642-17417726)
chr5 (23-91)||(30061360-30061428)
chr5 (23-91)||(30337575-30337643)
chr5 (1-91)||(30436779-30436869)
chr5 (1-91)||(30484367-30484457)
chr5 (1-91)||(30712478-30712568)
chr5 (23-91)||(29873162-29873230)
chr5 (23-91)||(30750634-30750702)
chr5 (1-91)||(30676338-30676428)
chr5 (40-91)||(30401079-30401130)
[»] chr3 (1 HSPs)
chr3 (1-91)||(25292997-25293087)
[»] chr4 (2 HSPs)
chr4 (23-91)||(20295632-20295700)
chr4 (31-91)||(52352955-52353015)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 7e-43; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-43
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 30241521 - 30241430
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaac 92  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241521 cacaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaac 30241430  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30207488 - 30207578
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| ||||| | ||| ||||||||||||||||||||  || |||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  30207488 cacaaacccatatttttgtattaaaattgctactcaccctagcatcattgtagaccaattgaacaagagttgtttttccaacaccacctaa 30207578  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 29854282 - 29854367
Alignment:
Q  6 acccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    ||||||| |||  ||| |||||||| ||||||  ||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  29854282 acccaaatttttttatcaaaattgccactcaccctaacatcattgtagaccaattgaagaagagttgtttttccaacaccacctaa 29854367  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 17417726 - 17417642
Alignment:
Q  8 ccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaac 92  Q
    ||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||||   ||||| ||||| |||| ||||||||||    
T  17417726 ccaaatttttgtattaaaattgctactcaccctaacatcattgtagaccaattgagctagagttgttttaccaataccacctaac 17417642  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 30061360 - 30061428
Alignment:
Q  23 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||| ||||||  ||||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  30061360 aaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaa 30061428  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 30337643 - 30337575
Alignment:
Q  23 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||| ||||||  ||||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  30337643 aaaattgccactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaa 30337575  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30436779 - 30436869
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| |||||||||    
T  30436779 cacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaa 30436869  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30484367 - 30484457
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| |||||||||    
T  30484367 cacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaa 30484457  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30712568 - 30712478
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| ||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| |||||||||    
T  30712568 cacaaacccaaaattttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaa 30712478  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 29873162 - 29873230
Alignment:
Q  23 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||| ||||||  ||||||||||||||||| ||||||  ||||| |||||||||| |||||||||    
T  29873162 aaaattgccactcaccctaacatcattgtagaccaattgaacgagagttgtttttccaataccacctaa 29873230  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 30750634 - 30750702
Alignment:
Q  23 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||  ||||||  ||||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  30750634 aaaattgtcactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaa 30750702  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30676428 - 30676338
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| |||||||||||  ||| ||||| || ||||||  ||||||||||| ||| | |||||| |||||| |||||||||| |||||||||    
T  30676428 cacaaacccaaacttttttatcaaaatggccactcaccctaacatcattgaagatcaattgaacaagagttgtttttccaataccacctaa 30676338  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 30401079 - 30401130
Alignment:
Q  40 taacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||    
T  30401079 taacatcattgtagaccaattgaacaagagttgttttaccaataccacctaa 30401130  T

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Target: chr3 (Bit Score: 51; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 25293087 - 25292997
Alignment:
Q  1 cacagacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  25293087 cacaaacccaaatttttgtattaaaagtgctactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaa 25292997  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 20295700 - 20295632
Alignment:
Q  23 aaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||| |||||||  | |||||||||||||  |||||| |||||| |||||||||| |||||||||    
T  20295700 aaaattgccactcacgcgatcatcattgtagactaattgaacaagagttgtttttccaataccacctaa 20295632  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 52352955 - 52353015
Alignment:
Q  31 tactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaa 91  Q
    |||||||  ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||    
T  52352955 tactcactctaacatcattgtagaccaattgaacaagagttgttttaccaacaccacctaa 52353015  T

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