View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-37 (Length: 80)
Name: Solexa-NF5817-37
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-37 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-34
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 37704459 - 37704387
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaa |
80 |
Q |
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| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaa |
37704387 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 37437525 - 37437453
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaa |
80 |
Q |
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| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaa |
37437453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
78 |
Q |
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| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta |
37698571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 16841203 - 16841264
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaa |
80 |
Q |
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| T |
16841203 |
cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaa |
16841264 |
T |
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