View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5817-38 (Length: 73)

Name: Solexa-NF5817-38
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5817-38
Solexa-NF5817-38
[»] chr7 (6 HSPs)
chr7 (8-68)||(5315369-5315429)
chr7 (9-68)||(5284566-5284625)
chr7 (15-68)||(5310655-5310708)
chr7 (15-68)||(5289508-5289561)
chr7 (8-68)||(5302754-5302814)
chr7 (8-68)||(46706792-46706852)
[»] chr5 (5 HSPs)
chr5 (15-68)||(1492426-1492479)
chr5 (8-68)||(1478257-1478317)
chr5 (8-68)||(1482451-1482511)
chr5 (8-68)||(1499498-1499558)
chr5 (8-68)||(1505235-1505295)
[»] chr1 (3 HSPs)
chr1 (8-68)||(44128832-44128892)
chr1 (8-68)||(44133037-44133097)
chr1 (8-68)||(44141459-44141519)
[»] chr2 (1 HSPs)
chr2 (12-68)||(24163598-24163654)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 5315429 - 5315369
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5315429 actaggaccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct 5315369  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 5284625 - 5284566
Alignment:
Q  9 ctaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5284625 ctagggccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct 5284566  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 5310708 - 5310655
Alignment:
Q  15 ccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5310708 ccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct 5310655  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 5289508 - 5289561
Alignment:
Q  15 ccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5289508 ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct 5289561  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 5302814 - 5302754
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| ||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  5302814 actagggccacgaaatgtgacagcggtgacctctgaacatacaaccaacacacgagcacct 5302754  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 46706792 - 46706852
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| || || |||||||| || ||||||||||| ||||||||||| ||||| ||||||    
T  46706792 actagggccgcggaatgtgactgcagtgacttcagaacaaacaaccaatacacgggcacct 46706852  T

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Target: chr5 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 1492479 - 1492426
Alignment:
Q  15 ccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||||||||||| || ||||||||||| |||||||| |||||||||||||||    
T  1492479 ccacgaaatgtgactgcagtgacttcagaacaaacaactaacacacgagcacct 1492426  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1478317 - 1478257
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| ||||| ||||| || || || |||||||| ||||||||||||||||||||||||    
T  1478317 actaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacct 1478257  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1482511 - 1482451
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| ||||| ||||| || || || |||||||| ||||||||||||||||||||||||    
T  1482511 actaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacct 1482451  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1499558 - 1499498
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    ||||||||||| ||||| ||  || |||| |||||| ||||||||||||||||||||||||    
T  1499558 actaggtccacaaaatgagattgcagtgatttcagaacaaacaaccaacacacgagcacct 1499498  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1505295 - 1505235
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| || ||||||||||| || |||||||| || || |||||||||||||| ||||||    
T  1505295 actagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacct 1505235  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 44128892 - 44128832
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| || ||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  44128892 actagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacct 44128832  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 44133097 - 44133037
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| || ||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  44133097 actagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacct 44133037  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 44141519 - 44141459
Alignment:
Q  8 actaggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    |||||| || ||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  44141519 actagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacct 44141459  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 24163598 - 24163654
Alignment:
Q  12 ggtccacgaaatgtgacagcggtgacttcagagcaaacaaccaacacacgagcacct 68  Q
    ||||||| ||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  24163598 ggtccacaaaatgtgattgcggtaacttcagaacaaacaaccaacacacgagaacct 24163654  T

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