View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5817-42 (Length: 55)
Name: Solexa-NF5817-42
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5817-42 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 48; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 39666834 - 39666885
Alignment:
| Q |
4 |
agcagaaaaagtgaaaaaggcaatgaaacaaaagacaaaacatcatccacca |
55 |
Q |
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| T |
39666834 |
agcagaaaaagtgaaaaaggcaatgaaacaaaagacacaacatcatccacca |
39666885 |
T |
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Target: chr3 (Bit Score: 44; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 42257460 - 42257511
Alignment:
| Q |
4 |
agcagaaaaagtgaaaaaggcaatgaaacaaaagacaaaacatcatccacca |
55 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
42257460 |
agcagaaaaagtgaaaaaggtaatgaaacaaaagacacaacatcatccacca |
42257511 |
T |
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