View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5818-1 (Length: 540)
Name: Solexa-NF5818-1
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 540
Target Start/End: Original strand, 3109242 - 3109793
Alignment:
| Q |
7 |
aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacagtgcaactaatactttagaacacattactttgctaagtttctcaaaa----- |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109242 |
aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacaatgcaactaatactttagaacacattactttgctaagtttctcaaaaccaga |
3109341 |
T |
|
| Q |
102 |
--------------tatatccttggtttgacagcttaaagaaaagatcatatgatttttcaataaggttagcttcacaatagccattaaccatggcagta |
187 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109342 |
actttctgttgaaatatatccttggtttgacagcttaaa-aaaagatcatatgatttttcaataaggttagcttcacaatagccattaaccatggcagta |
3109440 |
T |
|
| Q |
188 |
tagagttcgacactttcatttttcatacggttaaaatatgcctttgcttcttcaaccttgcctactgagcaataaccttcaaagataatcttatgtgtag |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
3109441 |
tagagttcgacactttcatttttcatacggttaaaatatgcctcagcttctccaaccttgcctactgaacaataaccttcaatgataatcttatgtgtag |
3109540 |
T |
|
| Q |
288 |
tagagttcggcttcacaccttgactgtccatataaatcaaaaggtcaatggcctcgctatcaagatcttttctaaataaaccggcggctagtacattata |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109541 |
tagagttcggcttcacaccttgactgtccatataaatcaaaaggtcaatgacctcgctatcaagatcttttctaaataaaccggcggctagtacattata |
3109640 |
T |
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| Q |
388 |
cgcaacaacatcaggtttaaatcctttttcctccatttctttaaacaaacattggtcttcaacggttttaccctgaagacaatatccattgataagggtt |
487 |
Q |
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| T |
3109641 |
cgcaacaacatcaggtttaaatcctttttcctccatttctttaaacaaacattgggcttcaacggttttaccctgaagacaatatccattgataagggtt |
3109740 |
T |
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| Q |
488 |
gtgtaatgtttgatatctaaatcgatattcatagatgtcaactcttccaacgt |
540 |
Q |
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| T |
3109741 |
gtgtaatgtttgatatctaaatcgatattcatagatgtcaactcttccaacgt |
3109793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 233 - 536
Target Start/End: Original strand, 3102506 - 3102809
Alignment:
| Q |
233 |
gcttcttcaaccttgcctactgagcaataaccttcaaagataatcttatgtgtagtagagttcggcttcacaccttgactgtccatataaatcaaaaggt |
332 |
Q |
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|||||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||| |
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| T |
3102506 |
gcttcttcaaccttgcctgctgaacacaaaccttcaatgataatcttatgtgtagtagagttcggctcaacaccttgactctccatataatttaaaaggt |
3102605 |
T |
|
| Q |
333 |
caatggcctcgctatcaagatcttttctaaataaaccggcggctagtacattatacgcaacaacatcaggtttaaatcctttttcctccatttctttaaa |
432 |
Q |
| |
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| || ||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3102606 |
ccattgcctcaaagtcagtacgatttctaaaaaaaccggcggctagtacattataagcaacaacatcaggtttaaatcctctttcctccatttctttaaa |
3102705 |
T |
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| Q |
433 |
caaacattggtcttcaacggttttaccctgaagacaatatccattgataagggttgtgtaatgtttgatatctaaatcgatattcatagatgtcaactct |
532 |
Q |
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|||| ||| |||| | || ||||||||||||| | ||||||||||||||||||||||| ||||| ||||||| ||||| | ||||||| ||||||| |
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| T |
3102706 |
taaactctgggcttcgatgggtttaccctgaagaaagtatccattgataagggttgtgtagtgtttcatatctacatcgagttgcatagatttcaactca |
3102805 |
T |
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| Q |
533 |
tcca |
536 |
Q |
| |
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|||| |
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| T |
3102806 |
tcca |
3102809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 6783720 - 6783786
Alignment:
| Q |
7 |
aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacagtgcaactaatactttaga |
73 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||| |
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| T |
6783720 |
aaaaatcaaacaaagagcgagcacgttccatattccctgcctggcacaatgcagctaataatttaga |
6783786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 106 - 528
Target Start/End: Complemental strand, 41627506 - 41627084
Alignment:
| Q |
106 |
tccttggtttgacagcttaaagaaaagatcatatgatttttcaataaggttagcttcacaatagccattaaccatggcagtatagagttcgacactttca |
205 |
Q |
| |
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|||| |||||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
41627506 |
tcctcggtttgacagctcatgaaaaagttcatatgatttttcaataaggtcagcttcacaatagccgctaaccatggcagtatagatttcgacactttca |
41627407 |
T |
|
| Q |
206 |
tttttcatacggttaaaatatgcctttgcttcttcaaccttgcctactgagcaataaccttcaaagataatcttatgtgtagtagagttcggcttcacac |
305 |
Q |
| |
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| ||||||| |||||||||| ||| |||||||||| ||||||| |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41627406 |
tctttcatagagttaaaatatccctcagcttcttcaatcttgccttctgaacaaaatccttcaatgataatcttatgtgtagtagagttcggcttcacac |
41627307 |
T |
|
| Q |
306 |
cttgactgtccatataaatcaaaaggtcaatggcctcgctatcaagatcttttctaaataaaccggcggctagtacattatacgcaacaacatcaggttt |
405 |
Q |
| |
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||||||| ||||||||| |||||||||| || ||||| ||| || || |||| | | |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
41627306 |
cttgactatccatataattcaaaaggtccattgcctcactaacatgacgatttccacacaaaccggcagctagtacattataagcaacaacatcaggttt |
41627207 |
T |
|
| Q |
406 |
aaatcctttttcctccatttctttaaacaaacat-tggtcttcaacggttttaccctgaagacaatatccattgataagggttgtgtaatgtttgatatc |
504 |
Q |
| |
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|||||| ||||||||||||||||| || || || | | ||| | ||| |||||| |||||||| || || || |||| ||||||||| ||||||||||| |
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| T |
41627206 |
aaatcccttttcctccatttctttgaa-aatgatataggctttatcgggtttaccttgaagacagtaacctttaataaaggttgtgtagtgtttgatatc |
41627108 |
T |
|
| Q |
505 |
taaatcgatattcatagatgtcaa |
528 |
Q |
| |
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|||||||||| ||||||| |||| |
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| T |
41627107 |
aaaatcgatatgcatagatttcaa |
41627084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 41627624 - 41627538
Alignment:
| Q |
7 |
aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacagtgcaactaatactttagaacacattactttgctaagtt |
93 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | |||||||| | || |||||||||||||| ||| |||||||||||||| |
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| T |
41627624 |
aaaaatcaaacaaagagcgagcacgttgcatattccctttctggcacaattcagctaatactttagaatacaatactttgctaagtt |
41627538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 106 - 408
Target Start/End: Complemental strand, 51281838 - 51281537
Alignment:
| Q |
106 |
tccttggtttgacagcttaaagaaaagatcatatgatttttcaataaggttagcttcacaatagccattaaccatggcagtatagagttcgacactttca |
205 |
Q |
| |
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|||| |||||||||||| | | ||||| |||||||||||||||||||||| || |||||||||| | ||||||||| ||| ||||| ||||||||||||| |
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| T |
51281838 |
tcctcggtttgacagctcataaaaaagttcatatgatttttcaataaggtcagtttcacaatagtcgttaaccatgtcagcatagatttcgacactttca |
51281739 |
T |
|
| Q |
206 |
tttttcatacggttaaaatatgcctttgcttcttcaaccttgcctactgagcaataaccttcaaagataatcttatgtgtagtagagttcggcttcacac |
305 |
Q |
| |
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| ||||||| |||||||||| ||| |||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
51281738 |
tctttcatatagttaaaatatccctcagcttcttcaaccttgccttttgaacacaaaccttcaatgataatcttatgtgtagtagagttcggctt-agac |
51281640 |
T |
|
| Q |
306 |
cttgactgtccatataaatcaaaaggtcaatggcctcgctatcaagatcttttctaaataaaccggcggctagtacattatacgcaacaacatcaggttt |
405 |
Q |
| |
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||||||| ||||||||| |||||||||| || ||||| ||| || || |||||| | ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51281639 |
cttgactatccatataattcaaaaggtccattgcctcactaacatgacgatttctacacaaaccggcggctagtacattataagcaacaacatcaggttt |
51281540 |
T |
|
| Q |
406 |
aaa |
408 |
Q |
| |
|
||| |
|
|
| T |
51281539 |
aaa |
51281537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 39337248 - 39337208
Alignment:
| Q |
374 |
gctagtacattatacgcaacaacatcaggtttaaatccttt |
414 |
Q |
| |
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||||||||||| || ||| |||||||||||||||||||||| |
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| T |
39337248 |
gctagtacattctaagcaccaacatcaggtttaaatccttt |
39337208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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