View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5818-10 (Length: 128)
Name: Solexa-NF5818-10
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-10 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 2e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 33082328 - 33082208
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
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| T |
33082328 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33082229 |
T |
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| Q |
108 |
gaagagagggttcaaacaagg |
128 |
Q |
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| T |
33082228 |
gaagagagggttcaaacaagg |
33082208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 33092188 - 33092068
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092188 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33092089 |
T |
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| Q |
108 |
gaagagagggttcaaacaagg |
128 |
Q |
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| T |
33092088 |
gaagagagggttcaaacaagg |
33092068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 33099684 - 33099564
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099684 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33099585 |
T |
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| Q |
108 |
gaagagagggttcaaacaagg |
128 |
Q |
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| T |
33099584 |
gaagagagggttcaaacaagg |
33099564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 33072591 - 33072467
Alignment:
| Q |
9 |
aagagagcttcgggaattaaggttcatga-------tgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtg |
101 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||| || ||||| |||||| ||||||| ||||| || ||||| |||| | |
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| T |
33072591 |
aagagagcttcgggaattaaggttcatgaatcatgatgatcctaaattgataaggaaaagta--cagaaaaggaagaagaggcaacataaaaatgcagag |
33072494 |
T |
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| Q |
102 |
aaatgggaagagagggttcaaacaagg |
128 |
Q |
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| T |
33072493 |
aaatgggaagagagggttcaatcaagg |
33072467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 3931473 - 3931357
Alignment:
| Q |
12 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
111 |
Q |
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|||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||| || |||||| ||| | ||||| |||| ||||||||||| |
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| T |
3931473 |
agagcttcaggaattaaggtccatgatgatcccaaactgataaagaaaagcatacataaggtgaagaagcagcaagaaaaaaatgcagagaaatgggaag |
3931374 |
T |
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| Q |
112 |
agagggttcaaacaagg |
128 |
Q |
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|||| |||||| ||||| |
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| T |
3931373 |
agagagttcaatcaagg |
3931357 |
T |
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