View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5818-14 (Length: 99)

Name: Solexa-NF5818-14
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5818-14
Solexa-NF5818-14
[»] chr7 (4 HSPs)
chr7 (7-59)||(3109242-3109294)
chr7 (7-59)||(6783720-6783772)
chr7 (57-96)||(3109242-3109281)
chr7 (61-96)||(6783720-6783755)
[»] chr3 (2 HSPs)
chr3 (7-42)||(41627589-41627624)
chr3 (61-96)||(41627589-41627624)


Alignment Details
Target: chr7 (Bit Score: 49; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 3109242 - 3109294
Alignment:
Q  7 aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacagtgca 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3109242 aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacaatgca 3109294  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 6783720 - 6783772
Alignment:
Q  7 aaaaatcaaacaaagagcgagcacgttccatattccatgcctggcacagtgca 59  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6783720 aaaaatcaaacaaagagcgagcacgttccatattccctgcctggcacaatgca 6783772  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 3109281 - 3109242
Alignment:
Q  57 gcatggaatatggaacgtgctcgctctttgtttgattttt 96  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3109281 gcatggaatatggaacgtgctcgctctttgtttgattttt 3109242  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 6783755 - 6783720
Alignment:
Q  61 ggaatatggaacgtgctcgctctttgtttgattttt 96  Q
    ||||||||||||||||||||||||||||||||||||    
T  6783755 ggaatatggaacgtgctcgctctttgtttgattttt 6783720  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 41627624 - 41627589
Alignment:
Q  7 aaaaatcaaacaaagagcgagcacgttccatattcc 42  Q
    ||||||||||||||||||||||||||| ||||||||    
T  41627624 aaaaatcaaacaaagagcgagcacgttgcatattcc 41627589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 41627589 - 41627624
Alignment:
Q  61 ggaatatggaacgtgctcgctctttgtttgattttt 96  Q
    |||||||| |||||||||||||||||||||||||||    
T  41627589 ggaatatgcaacgtgctcgctctttgtttgattttt 41627624  T

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