View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5818-2 (Length: 251)
Name: Solexa-NF5818-2
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 4031970 - 4032199
Alignment:
| Q |
8 |
taatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaattcaccttctcctttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031970 |
taatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaattcaccttctcctttc |
4032069 |
T |
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| Q |
108 |
cctcctccatctacatctacttcactctcatcattaccttcctcattcttcaaactatttatacatggaagcaaagtacaagcactacctttctcatcct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4032070 |
cctcctccatctacatctacttcactctcatcattaccttcctcattcttcaaactatttatacatggaagcaaagtacaagcactacctttctcatcct |
4032169 |
T |
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| Q |
208 |
cattatcattgccaaatcctattctcttcc |
237 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
4032170 |
cattatcattgccaaatcctattctcttcc |
4032199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 25882695 - 25882603
Alignment:
| Q |
13 |
cactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaattcaccttctcctt |
105 |
Q |
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|||| ||||||||||||||||| || ||| | || | |||||||| |||| ||||||||||| ||||||| |||||||||||||||||||| |
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| T |
25882695 |
cacttttccctaacacatatgcagaagcccttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaattcaccttctcctt |
25882603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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