View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5818-3 (Length: 212)

Name: Solexa-NF5818-3
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5818-3
Solexa-NF5818-3
[»] chr3 (11 HSPs)
chr3 (8-212)||(52847495-52847699)
chr3 (8-212)||(52847327-52847531)
chr3 (9-212)||(52847663-52847866)
chr3 (8-132)||(52848916-52849040)
chr3 (8-209)||(52848503-52848704)
chr3 (8-197)||(52848683-52848872)
chr3 (80-212)||(52849004-52849136)
chr3 (8-209)||(52847834-52848035)
chr3 (8-54)||(52847317-52847363)
chr3 (64-100)||(52848108-52848144)
chr3 (13-209)||(52848167-52848363)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 52847699 - 52847495
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52847699 cttttaatgtcctcaattttttgcttaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 52847600  T
Q  108 tacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagc 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52847599 tacaacacgtttccgattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagc 52847500  T
Q  208 atctt 212  Q
    |||||    
T  52847499 atctt 52847495  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 52847531 - 52847327
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    |||||||||||||||||||||| |  ||||||||||| | ||||||||||||||  | |||||||||||| ||||||||||||| |||| |||| |||||    
T  52847531 cttttaatgtcctcaattttttcctgaggagcatcttgatcactatgcccattccatatagatgatttacattctacctgaggaagagatatggtagcca 52847432  T
Q  108 tacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagc 207  Q
    ||||||| |||||||||||||||||||||||  |||||||||| |||||| || ||||| ||||||| |||||||||||||||||||||| |||||||||    
T  52847431 tacaacaagtttcagattcaaatgagtcattaaatttctctgtgtggtttacatgatggttgttggtccttttaatgtcctcaattttttgctgaggagc 52847332  T
Q  208 atctt 212  Q
    |||||    
T  52847331 atctt 52847327  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 52847866 - 52847663
Alignment:
Q  9 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 108  Q
    |||||| |||||||||||||| |  |||||||| || | ||||||||||||||  | |||||||||||| ||||||||||||  ||||||| | | ||||    
T  52847866 ttttaacgtcctcaatttttttctgaggagcatattgatcactatgcccattccatatagatgatttacattctacctgagggagagacattgcatccat 52847767  T
Q  109 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 208  Q
     ||||| | || |||||||||||| ||| | ||||||||| |  ||||  ||| |||  ||||||| |||||||||||||||||||||| || |||||||    
T  52847766 gcaacatggtttagattcaaatgaatcaatagatttctctttgaggttcacaatatgattgttggtccttttaatgtcctcaattttttgcttaggagca 52847667  T
Q  209 tctt 212  Q
    ||||    
T  52847666 tctt 52847663  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 52849040 - 52848916
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    |||||||||||||||| |||| ||  ||||||||||| | ||||||| |||||| || |||| |||||||  |||||||||||| ||||||||| || ||    
T  52849040 cttttaatgtcctcaacttttcgctgaggagcatcttgatcactatgtccattccctatagaagatttaccatctacctgaggaagagacatggcagtca 52848941  T
Q  108 tacaacacgtttcagattcaaatga 132  Q
    | ||||  | |||||||||||||||    
T  52848940 tgcaacggggttcagattcaaatga 52848916  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 52848704 - 52848503
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    |||||||||||||||||||||||   |||| ||| || | ||||||| |||||| |||||||||||||||  ||||||||| ||||||||| |  | |||    
T  52848704 cttttaatgtcctcaattttttgttgaggaacatattgatcactatgtccattccctgtagatgatttacaatctacctgacgaggagacacgacaacca 52848605  T
Q  108 tacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagc 207  Q
    |  |||| | ||||  |||  ||| |||||| ||||||||||   ||||  ||||||||  |||||| ||||  |||||||||||||| |  ||||||||    
T  52848604 tggaacatgattcatgttctgatgggtcattagatttctctgggaggttcacaagatggccgttggtcctttcgatgtcctcaattttcttgtgaggagc 52848505  T
Q  208 at 209  Q
    ||    
T  52848504 at 52848503  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 52848872 - 52848683
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    |||||||| |||||| |||||||   ||||||||||| | |||||||||||||| ||  | |||| || |  |||||   |||| |||| |||| |||||    
T  52848872 cttttaatatcctcagttttttgttgaggagcatcttgatcactatgcccattccctacaaatgacttgccatctacaaaaggaagagatatggcagcca 52848773  T
Q  108 tacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaatttttt 197  Q
    | ||||| | ||| ||||||||||||||| | ||||||||||   ||||  ||||||||  ||| || ||||||||||||||||||||||    
T  52848772 tgcaacagggttccgattcaaatgagtcaatagatttctctgataggttcacaagatggtcgttcgtccttttaatgtcctcaatttttt 52848683  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 52849136 - 52849004
Alignment:
Q  80 tctacctgaggaggagacatgggagccatacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttt 179  Q
    |||||| |||||||||| |||| ||||||||||| || ||  ||||||||||||||||| ||||||||||   ||||  ||||||||    |||  ||||    
T  52849136 tctacccgaggaggagaaatggcagccatacaacgcgatttggattcaaatgagtcattagatttctctgagaggttcacaagatggtcactggaccttt 52849037  T
Q  180 taatgtcctcaattttttcctgaggagcatctt 212  Q
    |||||||||||| ||||  ||||||||||||||    
T  52849036 taatgtcctcaacttttcgctgaggagcatctt 52849004  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 52848035 - 52847834
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagcca 107  Q
    ||||||||||||||||||||| |   |||| |||||| | || ||||| ||| | || |||||||||||| ||||||| ||||| |||||  ||  | ||    
T  52848035 cttttaatgtcctcaatttttagttgaggatcatcttgatcattatgctcatcccctttagatgatttacattctaccagaggatgagacggggctgtca 52847936  T
Q  108 tacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagc 207  Q
    | ||| | | ||| |||||| |||||||||| ||||||||||    ||   ||||||||  ||||||  |||||| |||||||||||||| |||||||||    
T  52847935 tgcaaaaggattctgattcatatgagtcattagatttctctgatacgtacacaagatggtggttggtaattttaacgtcctcaatttttttctgaggagc 52847836  T
Q  208 at 209  Q
    ||    
T  52847835 at 52847834  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 52847363 - 52847317
Alignment:
Q  8 cttttaatgtcctcaattttttgcgtaggagcatcttcaccactatg 54  Q
    ||||||||||||||||||||||||  ||||||||||| | |||||||    
T  52847363 cttttaatgtcctcaattttttgctgaggagcatcttgatcactatg 52847317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 52848144 - 52848108
Alignment:
Q  64 tgtagatgatttacgttctacctgaggaggagacatg 100  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  52848144 tgtagatgatttaggttctgcctgaggaggagacatg 52848108  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 52848363 - 52848167
Alignment:
Q  13 aatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccatacaa 112  Q
    |||||| |||||||||||   |||||||| || | |||||||||| |||  | ||||||| ||| |||| || ||  |||||||||||| | ||||  ||    
T  52848363 aatgtcttcaattttttgacgaggagcattttgatcactatgcccgttcattatagatgagttaggttcgacatgtcgaggagacatggcatccatgaaa 52848264  T
Q  113 cacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagcat 209  Q
    || | |||| ||| ||| ||||| || ||||||||| |  ||||  ||||| ||   |||||||||| |||||||||  |||||| | |||||||||    
T  52848263 catggttcaaattgaaacgagtctttagatttctctttgaggttcacaagacggtcattggttctttcaatgtcctcggttttttgccgaggagcat 52848167  T

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