View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5818-5 (Length: 158)
Name: Solexa-NF5818-5
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 3e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33082012 - 33082169
Alignment:
| Q |
1 |
agcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
33082012 |
agcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttc |
33082111 |
T |
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| Q |
101 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
158 |
Q |
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| T |
33082112 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
33082169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33091872 - 33092029
Alignment:
| Q |
1 |
agcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttc |
100 |
Q |
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| T |
33091872 |
agcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttc |
33091971 |
T |
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| Q |
101 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33091972 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
33092029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33099368 - 33099525
Alignment:
| Q |
1 |
agcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
33099368 |
agcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttc |
33099467 |
T |
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| Q |
101 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099468 |
ttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttg |
33099525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 33072318 - 33072428
Alignment:
| Q |
48 |
taccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatcattaatcttctc |
147 |
Q |
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|||||||| |||| ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
33072318 |
taccattacgaaaaccttccttacgaccttcaaatccaggccgtaatagcttcttctctctctttgcaatcttcctcagtttcttatcattaatcctctc |
33072417 |
T |
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| Q |
148 |
agctatatttg |
158 |
Q |
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| T |
33072418 |
agctatatttg |
33072428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 3931197 - 3931317
Alignment:
| Q |
36 |
gttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatc |
135 |
Q |
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||||||||||| | | ||||| ||| |||||||| |||| |||||| || ||| |||||| || ||||||||||||||||||||||||| ||||| ||| |
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| T |
3931197 |
gttagccagaactgctattaataaaaccttccttgcgaccttcaaagcccggccgtaatagctttttctctctctttgcaatcttcctcattttcttatc |
3931296 |
T |
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| Q |
136 |
attaatcttctcagctatatt |
156 |
Q |
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| T |
3931297 |
attaatcctctcagctatatt |
3931317 |
T |
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