View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5818-6 (Length: 155)
Name: Solexa-NF5818-6
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-6 |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 2e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 29312395 - 29312248
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312395 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
29312296 |
T |
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| Q |
108 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatc |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312295 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatc |
29312248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 34635471 - 34635619
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| | |
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| T |
34635471 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacgg |
34635570 |
T |
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| Q |
107 |
caagcttctcactatggtcataaagattctcagctttttcctcttgatc |
155 |
Q |
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| T |
34635571 |
caagcttctcactatgcttacaaagactctcaactttttcctcttgatc |
34635619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 29054633 - 29054775
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||| || |
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| T |
29054633 |
atatactaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaccgcattgtcgactgtccattcaaattaagtatcccaaatgcaacagc |
29054732 |
T |
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| Q |
108 |
aagcttctcactatggtcataaagattctcagctttttcctct |
150 |
Q |
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| T |
29054733 |
aagcttctcactatggttacaaagattctcagttttttcctct |
29054775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 9e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 9e-53
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 13792362 - 13792510
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcccgaatgcaaccg |
106 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||||| | |
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| T |
13792362 |
atatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatcccaaatgcaacag |
13792461 |
T |
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| Q |
107 |
caagcttctcactatggtcataaagattctcagctttttcctcttgatc |
155 |
Q |
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| T |
13792462 |
caagcttctcactatggttacaaagactctcagctttttcctcttgatc |
13792510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 28743880 - 28743732
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcccgaatgcaaccg |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || ||||| | |
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| T |
28743880 |
atatacttaatggcattgtgacaatcaccgcatattctcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcccaaaggcaacag |
28743781 |
T |
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| Q |
107 |
caagcttctcactatggtcataaagattctcagctttttcctcttgatc |
155 |
Q |
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|||||||||||||||||| | | ||| |||||||||||||||||||||| |
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| T |
28743780 |
caagcttctcactatggttacagagactctcagctttttcctcttgatc |
28743732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 97; Significance: 5e-48; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 4443 - 4295
Alignment:
| Q |
8 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| | |
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| T |
4443 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacgg |
4344 |
T |
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| Q |
107 |
caagcttctcactatggtcataaagattctcagctttttcctcttgatc |
155 |
Q |
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|||||||||||||||| | | ||||| ||||| |||||||||||||||| |
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| T |
4343 |
caagcttctcactatgcttacaaagactctcaactttttcctcttgatc |
4295 |
T |
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