View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5818-8 (Length: 138)
Name: Solexa-NF5818-8
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5818-8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 4032487 - 4032624
Alignment:
| Q |
1 |
ccaactaggttattgcttcggagatcaaagttcacggttggcggtaatttcccgagtgagctcggaatcctaccggagaaatggttgaacgataggttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4032487 |
ccaactaggttattgcttcggagatcaaagttcacggttggcggtaatttcccgagtgagctcggaatcctaccggagaaatggttgaacgataggttca |
4032586 |
T |
|
| Q |
101 |
acgtgccggagagggaaccgaggtcaccaatgtcgtct |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4032587 |
acgtgccggagagggaaccgaggtcaccaatgtcgtct |
4032624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University