View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5819-6 (Length: 103)
Name: Solexa-NF5819-6
Description: NF5819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5819-6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 2e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 18748566 - 18748668
Alignment:
| Q |
1 |
aacatatttcttttaaaaccacaatcccacaagtcataaaaaaggggatagtagttaacttcattctattaagtatttttactttacatttcaaaaacaa |
100 |
Q |
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| T |
18748566 |
aacatttttcttttaaaaccacaatcccacaagtcataaaaaaggggatagtagttaacttcattctattaagtatttttactttacatttcaaaaacaa |
18748665 |
T |
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| Q |
101 |
act |
103 |
Q |
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||| |
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| T |
18748666 |
act |
18748668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18727573 - 18727639
Alignment:
| Q |
1 |
aacatatttcttttaaaaccacaatcccacaagtcata-aaaaaggggatagtagttaacttcattc |
66 |
Q |
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| T |
18727573 |
aacatatttcttttaaaaccacattccaacaagtcacagaaaagggggatagtagttaacttcattc |
18727639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 4804747 - 4804788
Alignment:
| Q |
62 |
cattctattaagtatttttactttacatttcaaaaacaaact |
103 |
Q |
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| T |
4804747 |
cattctatgaagtatttttactttacatttcaaaaacaaact |
4804788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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